<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08415

Description Uncharacterized protein
SequenceMEHLRQKSSAIPSWSEIIKRAKTNMMEKRNPLDVEERKQISKCISLLMENIKINSVSELFEQLEDISSKTSLTFMRSPSASTSSFITSDCFFIEIVADEVGKAVRVCITFGQQAAEESDALLNVINSCNWPELEKHLNGLKMAYINTRDRTLKSQAFSFVQNVEKQLSALTTPRCDIENLPEYLLTSDYGYFQPRNAGIAGRLYFFVHPYDLLDVQNNSVRRTVSLSDLSKLKIGTYAELLLSNCDQSEKLVNGFMMDDLNFALESMCHGSTMDVCATFVFRFPAGLLVTTESVERFSTSQFSNRITYGPDFAKEKLRVQFRHESCFVYCYKLPGQNHCYWINIRGGVEAVDITELRFLNTNLIPQIINILRANVLLTSVFASSVRNVKQGAALQQDVVNDQGLCYIHIDCHDTSTIECVLENLKDGSFVSVKFDLSDFRAFNVLVSSLSGSMLSFPVDDVEKVFAKCWSIPVTMRSLILKMTDIPKEEIKNFYKTPPAAPVVCSTDSWNDVSDQSDSVLLRSAYNNKQNFSSYLPVKEMLPCSGKAACDKRHRDHHFQSNLLNLTEFSWRAPGSNNRRPSNLLDLFKEIEVWHELIPPRQCQVMKKQFTTGQPHVRNSFHANATQPPQLPVSAPLGVVCSVSNNKGSSKARHMNSTSEALTELDELCQLSSSLTDSAHAVFDDSHGSSHAQGDTPTAVEAKSVVTSFVDSNKSSIQDAIDSVVGSVNSSPRNSIDVFDFEASASTFDLGAGLDIHHHWSSQTDGRASLSGHLHSVSTSGRVNEELDASSWAEQRNALALRGILGTRGGSIRRRRARKSMGNVADHTMELVMKGMRKAERMVRGTGGQRRPRKARVLSADNIRNVAMNPGSSGSGAGGAPFLSRKLPLKLCQQQQGIPMTTGGDDTLDASGYELQLCTVPSVFGMHDGRGFHAVSSGARGEDSATTVTTSNQQRLESCLESDGSDASERFKDETLRKQMQAVVRAVFSDVKLTSFADTETDVLSSSTPSSSFSGTEKNYCSTSGNVSSDYGSFDSSKGGSNVFHDSATNDIGSLMVSASMGFAGSGSSKLHKRKNSLDAVIGKLMDKVGTGTIDSYTEQSADESMMDASAEQDVYELTSAAKRFKEDDTGGNGQGGTSSSSSSARFLSEMVSGEKKEPVSLVKALAESGSGENVEISERIKLVIKKSSIIKLPSSKSSSSSSAKQQRAENKANMLSLKRSSPPLTFSSLASAQVSLPMKSLSDKDPVLLLEKLQTGNKLDVLKHKIQDKKLRKQVSVHGEQPTRQRVRSSSAVSKTEKAAAKQQKQAEVAAERKSSEKASQKPSSNAGTTSASGPGSNDLPRVFSGSEGILFSKSLKGFKIPKIEDSSKAGQSSGGGGGAVSSASNLSVGGGTCSLLPPSQSVAQQQQTEPVGGAAKPIVDTQASEECVAKSTLSHSNPNSEQSKSPARKVFSSQQTTAKVPKSILKHVPTPPLQPQSVGALGIFPPQNDYPASTSFRPYARKTLLPDPPAQNKILTTDQKNQCVTHQRPVLLGFNASSSLEQGPPMTRPLAQTVLTQQTSSPISVSPPDIIPSPESNGLVIDDTPKSPCGIQTCAKEGDPAYKSVQQKCPAYVAGDLPSQAATTAASAVTDNKVEGDK
Length1639
PositionMiddle
OrganismSoboliphyme baturini
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Dioctophymatida> Dioctophymatoidea> Soboliphymatidae> Soboliphyme.
Aromaticity0.06
Grand average of hydropathy-0.419
Instability index48.07
Isoelectric point8.20
Molecular weight177409.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08415
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     814.49|     161|     162|    1033|    1193|       1
---------------------------------------------------------------------------
  682-  807 (135.73/60.90)	..............................................FDDSHGSSHAQGDTPTAvEAKSV.VT...S....FVDSNKSSI...QDAI...DSVVGS.VNSSPRNS.................IDV..F.DFE.AS.ASTFDLGAGLDIHHHWSS.....QTD....GRASLSGHLH.....SVSTSGRVNEELdASswAEQ..RNALALRGILgTR
  808-  988 (167.08/76.68)	GGSIRR.....RRARKSMGNVADHTMelVMKGMrkaermvrgtggqRRPRK..ARVL..SADN..IRNVaMN...PGSSG.SGAGGAPFLSRKLPLklcQQQQGIPMTTGGDDT.................LDAsgY.ELQLCTvPSVFGMHDGRGFHAVSSGA.R.GEDSattvTTSNQQRLESclesdGSDASERFKDET.L.....R..KQMQAVVRAV.FS
 1004- 1167 (241.87/114.34)	SSSTPS.....SSFSGTEKNYCSTSG..NVSSD..........ygsFDSSKGGSNVFHDSATN.DIGSL.MV...SASMGFAGSGSSKLHKRKNSL...DAVIGKLMDKVGTGT.................IDS..Y.TEQSAD.ESMMDASAEQDVYELTSAAKRFKEDD....TGGNGQGGTS.....SSSSSARFLSEM.VS..GEK..KEPVSLVKAL.AE
 1168- 1332 (150.11/68.14)	SGSGEN.....VEISERIKLVIKKSS..IIKLP..........sskSSSS...SSAKQQRAEN.KANML.SLkrsSPPLTFSSLASAQVSLPMKSLsdkDPVL..LLEKLQTGNkldvlkhkiqdkklrkqVSV..H.GEQPTR.QRVRSSSAVSKTEK..AAAKQQKQ..........................AEVAAER.KS..SEKasQKPSSNAGTT.SA
 1333- 1457 (119.71/52.83)	SGPGSNdlprvFSGSEGI.LFSKSLK..GFKIP...........kiEDSSKAG......QSSG.GGGGA.VS...SASNLSVGGGTCSLLPPSQSV.....AQQQQTEPVGGAA..............kpiVDT..QaSEECVA.KSTLSHSNPNSEQSKSPARKVFSSQQ....T.................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.66|      43|     178|      32|      75|       2
---------------------------------------------------------------------------
   32-   75 (66.09/48.71)	LDVEErKQISKCISLL.MENIKINSVSELFEQLEDISSKTSLTFM
  213-  256 (66.57/44.18)	LDVQN.NSVRRTVSLSdLSKLKIGTYAELLLSNCDQSEKLVNGFM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08415 with Med1 domain of Kingdom Metazoa
Unable to open file!