<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08415

Description Uncharacterized protein
SequenceMEHLRQKSSAIPSWSEIIKRAKTNMMEKRNPLDVEERKQISKCISLLMENIKINSVSELFEQLEDISSKTSLTFMRSPSASTSSFITSDCFFIEIVADEVGKAVRVCITFGQQAAEESDALLNVINSCNWPELEKHLNGLKMAYINTRDRTLKSQAFSFVQNVEKQLSALTTPRCDIENLPEYLLTSDYGYFQPRNAGIAGRLYFFVHPYDLLDVQNNSVRRTVSLSDLSKLKIGTYAELLLSNCDQSEKLVNGFMMDDLNFALESMCHGSTMDVCATFVFRFPAGLLVTTESVERFSTSQFSNRITYGPDFAKEKLRVQFRHESCFVYCYKLPGQNHCYWINIRGGVEAVDITELRFLNTNLIPQIINILRANVLLTSVFASSVRNVKQGAALQQDVVNDQGLCYIHIDCHDTSTIECVLENLKDGSFVSVKFDLSDFRAFNVLVSSLSGSMLSFPVDDVEKVFAKCWSIPVTMRSLILKMTDIPKEEIKNFYKTPPAAPVVCSTDSWNDVSDQSDSVLLRSAYNNKQNFSSYLPVKEMLPCSGKAACDKRHRDHHFQSNLLNLTEFSWRAPGSNNRRPSNLLDLFKEIEVWHELIPPRQCQVMKKQFTTGQPHVRNSFHANATQPPQLPVSAPLGVVCSVSNNKGSSKARHMNSTSEALTELDELCQLSSSLTDSAHAVFDDSHGSSHAQGDTPTAVEAKSVVTSFVDSNKSSIQDAIDSVVGSVNSSPRNSIDVFDFEASASTFDLGAGLDIHHHWSSQTDGRASLSGHLHSVSTSGRVNEELDASSWAEQRNALALRGILGTRGGSIRRRRARKSMGNVADHTMELVMKGMRKAERMVRGTGGQRRPRKARVLSADNIRNVAMNPGSSGSGAGGAPFLSRKLPLKLCQQQQGIPMTTGGDDTLDASGYELQLCTVPSVFGMHDGRGFHAVSSGARGEDSATTVTTSNQQRLESCLESDGSDASERFKDETLRKQMQAVVRAVFSDVKLTSFADTETDVLSSSTPSSSFSGTEKNYCSTSGNVSSDYGSFDSSKGGSNVFHDSATNDIGSLMVSASMGFAGSGSSKLHKRKNSLDAVIGKLMDKVGTGTIDSYTEQSADESMMDASAEQDVYELTSAAKRFKEDDTGGNGQGGTSSSSSSARFLSEMVSGEKKEPVSLVKALAESGSGENVEISERIKLVIKKSSIIKLPSSKSSSSSSAKQQRAENKANMLSLKRSSPPLTFSSLASAQVSLPMKSLSDKDPVLLLEKLQTGNKLDVLKHKIQDKKLRKQVSVHGEQPTRQRVRSSSAVSKTEKAAAKQQKQAEVAAERKSSEKASQKPSSNAGTTSASGPGSNDLPRVFSGSEGILFSKSLKGFKIPKIEDSSKAGQSSGGGGGAVSSASNLSVGGGTCSLLPPSQSVAQQQQTEPVGGAAKPIVDTQASEECVAKSTLSHSNPNSEQSKSPARKVFSSQQTTAKVPKSILKHVPTPPLQPQSVGALGIFPPQNDYPASTSFRPYARKTLLPDPPAQNKILTTDQKNQCVTHQRPVLLGFNASSSLEQGPPMTRPLAQTVLTQQTSSPISVSPPDIIPSPESNGLVIDDTPKSPCGIQTCAKEGDPAYKSVQQKCPAYVAGDLPSQAATTAASAVTDNKVEGDK
Length1639
PositionMiddle
OrganismSoboliphyme baturini
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Dioctophymatida> Dioctophymatoidea> Soboliphymatidae> Soboliphyme.
Aromaticity0.06
Grand average of hydropathy-0.419
Instability index48.07
Isoelectric point8.20
Molecular weight177409.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08415
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     814.49|     161|     162|    1033|    1193|       1
---------------------------------------------------------------------------
  682-  807 (135.73/60.90)	..............................................FDDSHGSSHAQGDTPTAvEAKSV.VT...S....FVDSNKSSI...QDAI...DSVVGS.VNSSPRNS.................IDV..F.DFE.AS.ASTFDLGAGLDIHHHWSS.....QTD....GRASLSGHLH.....SVSTSGRVNEELdASswAEQ..RNALALRGILgTR
  808-  988 (167.08/76.68)	GGSIRR.....RRARKSMGNVADHTMelVMKGMrkaermvrgtggqRRPRK..ARVL..SADN..IRNVaMN...PGSSG.SGAGGAPFLSRKLPLklcQQQQGIPMTTGGDDT.................LDAsgY.ELQLCTvPSVFGMHDGRGFHAVSSGA.R.GEDSattvTTSNQQRLESclesdGSDASERFKDET.L.....R..KQMQAVVRAV.FS
 1004- 1167 (241.87/114.34)	SSSTPS.....SSFSGTEKNYCSTSG..NVSSD..........ygsFDSSKGGSNVFHDSATN.DIGSL.MV...SASMGFAGSGSSKLHKRKNSL...DAVIGKLMDKVGTGT.................IDS..Y.TEQSAD.ESMMDASAEQDVYELTSAAKRFKEDD....TGGNGQGGTS.....SSSSSARFLSEM.VS..GEK..KEPVSLVKAL.AE
 1168- 1332 (150.11/68.14)	SGSGEN.....VEISERIKLVIKKSS..IIKLP..........sskSSSS...SSAKQQRAEN.KANML.SLkrsSPPLTFSSLASAQVSLPMKSLsdkDPVL..LLEKLQTGNkldvlkhkiqdkklrkqVSV..H.GEQPTR.QRVRSSSAVSKTEK..AAAKQQKQ..........................AEVAAER.KS..SEKasQKPSSNAGTT.SA
 1333- 1457 (119.71/52.83)	SGPGSNdlprvFSGSEGI.LFSKSLK..GFKIP...........kiEDSSKAG......QSSG.GGGGA.VS...SASNLSVGGGTCSLLPPSQSV.....AQQQQTEPVGGAA..............kpiVDT..QaSEECVA.KSTLSHSNPNSEQSKSPARKVFSSQQ....T.................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.66|      43|     178|      32|      75|       2
---------------------------------------------------------------------------
   32-   75 (66.09/48.71)	LDVEErKQISKCISLL.MENIKINSVSELFEQLEDISSKTSLTFM
  213-  256 (66.57/44.18)	LDVQN.NSVRRTVSLSdLSKLKIGTYAELLLSNCDQSEKLVNGFM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08415 with Med1 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELTSAAKRFKEDDTGGNGQGGTSSSSSSARFLSEM
2) FNASSSLEQGPPMTRPLAQTVLTQQTSSPISVSPPDIIPSPESNGLVIDDTPKSPCGIQTCAKE
3) GRGFHAVSSGARGEDSATTVTTSNQQRLESCLESDGSDASERFKDET
4) GSIRRRRARKSMGNVADHTMELVMKGMRKAERMVRGTGGQRRPRKARVLSADNIRNVAMNPGSSGSGAGGA
5) LSVGGGTCSLLPPSQSVAQQQQTEPVGGAAKPIVDTQASEECVAKSTLSHSNPNSEQSKSPARKVFSSQQTTAKVPKSILKHVPTPP
6) QPQSVGALGIFPPQNDYPASTSFRPYARKTLLPDPPAQNKILTTDQKNQ
7) VLKHKIQDKKLRKQVSVHGEQPTRQRVRSSSAVSKTEKAAAKQQKQAEVAAERKSSEKASQKPSSNAGTTSASGPGSNDLPRVFS
1116
1535
928
809
1387
1475
1261
1150
1598
974
879
1473
1523
1345










Molecular Recognition Features






MoRF SequenceStartStop




1) ILFSKSLKGFKIPKI
2) LVIKKSSIIKLPSSK
3) QQKQAEVAAER
4) STSFRPYARKTLL
5) TTAKVPKSILK
1350
1182
1303
1494
1457
1364
1196
1313
1506
1467