<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08405

Description Uncharacterized protein
SequenceMSGFPYEGCSSESPLISVESTNEWQIYDILYDGQERYLQPLTFSDHVSKLAHLVDWMKLQQDENGETSDVTGEDAKAVQKTGIGPWEGVSKQLHLALTEMNVLLDLINVAMTGKYMVFDPVSHDPSDENRSGGKADAYTLVSKRKSLCLASSVLLDFVERQKQKLGVQQSQNDEQSFFRELTNLRRGWRLKKTGDVIYGDLSYRSFGPKFRPNATFEVHKKQTKNDTQNMTTGTGAINGGCSSLIDLVIPHDLAEECVLKVFIFDESCSVPIEMLTSLDKSSFRSNIRNSCKEVYMWQERLEKAQKTLYHKDMFSEAIRLLFQSSTSCHSLFVLEHSLSQLYCKGIESSCEAVIMRPVSTPLTTQSKRLRLAGPEAMNVRQICDFEDDRLLLEQIIDQASHYLLLQKTKAALEEFAARCIEPTISVYWTPETSKYVSLARIHMMTPFYEFCSKAMISLEVHVKTLRVTMKDGETTEITENVDELISLLEAQVSAMIFIKRYMCYVGKPCSAIRIRG
Length516
PositionHead
OrganismSoboliphyme baturini
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Enoplea> Dorylaimia> Dioctophymatida> Dioctophymatoidea> Soboliphymatidae> Soboliphyme.
Aromaticity0.08
Grand average of hydropathy-0.288
Instability index47.23
Isoelectric point5.75
Molecular weight58560.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08405
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.71|      18|     275|      85|     102|       1
---------------------------------------------------------------------------
   85-  102 (34.70/24.81)	PWEGVSKQLHLALTE.MNV
  361-  379 (29.01/19.63)	PLTTQSKRLRLAGPEaMNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.58|      15|      30|     301|     315|       2
---------------------------------------------------------------------------
  301-  315 (26.69/17.00)	LEKAQKTLYHKDMFS
  334-  348 (26.89/17.17)	LEHSLSQLYCKGIES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.64|      27|      30|     398|     425|       3
---------------------------------------------------------------------------
  398-  425 (40.50/30.21)	QASHYLLLQKTKaALEEFAARCIEPTIS
  431-  457 (48.13/31.58)	ETSKYVSLARIH.MMTPFYEFCSKAMIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08405 with Med17 domain of Kingdom Metazoa
Unable to open file!