<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08395

Description Uncharacterized protein
SequenceMGVLNEDKQQTDISWVTNLVTRAHAEGMSAIEFGAFLKKRITTSGCNEQQYRAISSMLLRFATASVTPDQRMLSCLEALVKAEVLRWAVFIEVIAEFRQFSREYCIEALATILRNSVPLLKCNYTSEKECLELSGSLMTVLNWCLLALEYSLKNENKRSTQALIHCACAYANSKFVRALLYIHEHIGAESVNYVVEAAVSFAQSYPDCEELKTMTEALQQFGTSPAERIEDNLGGLVKQSHPAILTLVSVFEGFRMTKKVDQMADSFFELAEILEFPFPKMFEDMIRASLLIMLDAKESLGEELVASQAFYYVKLPQIVKHLLILGAPLDDLITALNTICDNKTLLNQVDMKTKTNTFQHLLEQMAAAGVIDEGVLKNLLEKSSICLVLCRIAIKKLSYGFVRILFELSHVCLEFCRSQYWPELFQMLAQTSTTPVHQPLILRANSAKMAVDKILRQPNNAVINVLLKLASGSGGLFTFDSVCASFCADGNLTYFSAKLAMINGQSERPAEGLDMDDERQRALAFNLSFILLTRIRFIYDDLRPSELVNGTVRGMDNTQSCFYKFASQYGWTAADSCGLSNTYTNEQKAAFIDRVNILKRGQPFWDSRTVNYAELVDFIPVIGEILLDDFRMTKFENYEHLHENIKNVLHAFRDDANFMIVCLVQWMCSQPVTTSRQSLVKSFIRALEYPHQLNHTQQERMVLTSATCRRTLDDLSICDRLRDPRFTWIINCAKRKLPTVPFTLPATNAQSSDAEMLKQAFTYARQQAWGSPNVLQLVDRCNKAGVVENWCMVWLNAMLKLSTNDEMLCASELCLAAGIMSPVPCMLSFARSITEYIFEQNVDFGCVEPKALVSARFLVHCLQLAMHAYWRQQKERQTRIVRGECVEKKRNDDDDDGETDQGNPVERSVLVIFEKFVRETRAGHLKSTITFIYHFVVSLTTAPPNAATRRIIELLPHDLMLNLARLDPQTFNLDLYLPLMNLCDIASTKSALQFTCLLRKLGGF
Length1004
PositionTail
OrganismOnchocerca flexuosa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.09
Grand average of hydropathy-0.007
Instability index45.99
Isoelectric point6.09
Molecular weight113736.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08395
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.10|      19|      20|     239|     258|       1
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  239-  258 (27.73/22.57)	QSHPAILTLVSVFEgFRMTK
  262-  280 (33.37/21.72)	QMADSFFELAEILE.FPFPK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     323.04|      85|     448|     295|     421|       2
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  327-  416 (135.96/132.64)	APLDDLITALNTIcdnktLLNQVDMKTKTNTFQHLLEQMAAAGVIDEGVLKNLLEKSS...ICLV..LCRIAI....KKLSYGFVRILFELSHVCLEFC
  424-  487 (91.19/66.39)	..................LFQMLAQTSTTPVHQPLILRANSAKMAVDKILRQ..PNNA...VINV..LLKLA......SGSGG....LFTFDSVCASFC
  613-  691 (95.88/45.58)	AELVDFIPVIGEI.....LLDDFRM.TKFENYEHLHENI.......KNVLHAFRDDANfmiVCLVqwMCSQPVttsrQSLVKSFIRAL.EYPH......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.09|      36|     545|     202|     238|       3
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  202-  238 (60.35/38.82)	AQSyPDCEELK.TMTEALQQ.FGTSPAERIED..NLGGLVK
  749-  788 (50.74/27.71)	AQS.SDAEMLKqAFTYARQQaWGSPNVLQLVDrcNKAGVVE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.42|      26|      27|      60|      86|       4
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   60-   86 (41.29/33.66)	RFATaSVTP...DQRM.LS...CLE..ALVKAEVLR
   92-  114 (22.60/11.58)	.....EVIA...EFRQ.FSreyCIE..AL..ATILR
  828-  858 (23.53/12.75)	SFAR.SITEyifEQNVdFG...CVEpkALVSARFL.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.28|      22|     645|     142|     167|       5
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  142-  167 (36.34/26.90)	NWCLLALEYSLKnenkRSTQALIHCA
  789-  810 (44.94/24.16)	NWCMVWLNAMLK....LSTNDEMLCA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08395 with Med24 domain of Kingdom Metazoa
Unable to open file!