<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08382

Description Uncharacterized protein
SequenceMGQSAQFCSPPGMMNAPNPIYSFPGGTMCSMNTDPIHSSHMLSGMHGTTPSQSFSANSMHGAGPPNGQFCMQQSQQPFQQLNHFVNNANFNGQMGMGAMNPSQQNIYQQQMMFRCNMGGNLTPQHAIHLSDSYGTDSQIRPNQAQVEPPPSFSQAVSHQYPPVHNVQAGSIMYSQSSHIMRPNTLIAQAQNPNMMYGPRTPQNSIMTVPSSIGSPNNGGLFGNRLMNMPAVMDAAAVPPSRMRYPEGKSLVLAVLLQDTVLDLHYDSVFDACPICSCNGSIRAKELGVYITPPEVLRQPPAQQQLIVSKPTSGFYNNTSNSCNCGFSAVRHRYLSMKAGLFAEDAKEATDISETQNQPAIPHTIWFDSMSGRLVPIYIEQDY
Length382
PositionMiddle
OrganismOnchocerca flexuosa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.08
Grand average of hydropathy-0.406
Instability index59.63
Isoelectric point6.48
Molecular weight41703.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08382
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     179.04|      35|      38|      61|      95|       1
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   24-   59 (35.82/13.73)	....PGGTMCsMNtdpiHSSHMLSGMHGTTPSQSFSANSM
   61-   95 (66.06/31.35)	GAGPPNGQFC.MQ....QSQQPFQQLNHFVNNANFNGQMG
   97-  118 (40.37/16.38)	GAMNPSQQNI.YQ....Q.QMMFR............CNMG
  119-  147 (36.78/14.29)	GNLTPQHAIH.LS....DSYGTDSQIRP..NQAQVE....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.47|      20|      45|     178|     202|       2
---------------------------------------------------------------------------
  180-  202 (32.63/22.91)	MR.PNTLIAQAQNPNMMygpRTPQ
  226-  246 (31.84/ 9.76)	MNmPAVMDAAAVPPSRM...RYPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08382 with Med13 domain of Kingdom Metazoa
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