<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08373

Description Uncharacterized protein
SequenceMSTNGGSLEDCHTNVFALTELNGLKWKCLTTPLSQRTWTSLEQDPVLSAYAKCLQAGILCAWRRQPPQPTSTLTAMQLPDYRIDVVKELWIFWYSHEEPDCLTEYTSHLACAEDGQGNWSVPGIQYETRTLFFKALHNLIERNMLKNGYIRIGKYFTRPYEVPSSDRIHCSPNYVNGISFNFFVHGENIVCATVCVQRQPTLFRLSRRHLDLGKKQSVILGPWSMRAILLPEQPRIVDSTTSVLQQQPLTPECDSFTNSSTAYASSYREPLSSVAHQVNPAPSSSIESETVNSNNEDNAGTISKAAVDKLWSEWLQFFCLIVNVERNLSSADTVGYIGYTENASSTKSSLPKMVLVDVDGVHMWYPSSLIVVQASDDLLMRQNEKTANESSSDFFNSRTNSRSFTPRTPPTTRLRSSPSFRKRKKRLSECDVEASAEWHNAMYGTMVNGARAAQRFFEESFIAPANSRRKENSESPSSSGLGLLLSSATSDDDC
Length494
PositionMiddle
OrganismOnchocerca flexuosa
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.09
Grand average of hydropathy-0.427
Instability index55.02
Isoelectric point6.24
Molecular weight55420.59
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08373
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     279.61|     110|     181|     113|     293|       1
---------------------------------------------------------------------------
  113-  178 (66.95/216.06)	EDGQGNWSVPGIQ..YETRTLFFKALHNlIERNMLKNGYI.RIGkyFTrpyEVPSSDRiHCSPNY....VNGI............................................................................................................
  231-  283 (52.44/93.96)	.........................................................................sfnffvhgenivcatvcvqrqptlfrlsrrhldlgkkqsvilgpwsmraillPEQPRIVDSTTSVL..QQQPLTPECDS.FTNSSTAyASSYrEPLSSVAHQVNPAPS
  296-  419 (160.22/ -nan)	EDNAGTISKAAVDklWSEWLQFFCLIVN.VERNLSSADTVgYIG..YT...ENASSTK.SSLPKMvlvdVDGV................................................hmwyPSSLIVVQASDDLLmrQNEKTANESSSdFFNSRTN.SRSF.TPRTPPTTRLRSSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.34|      18|      22|      27|      45|       2
---------------------------------------------------------------------------
   27-   45 (29.33/17.41)	KCLTTPLsQRTWTSLEQDP
   52-   69 (36.02/17.84)	KCLQAGI.LCAWRRQPPQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08373 with Med13 domain of Kingdom Metazoa
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