<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08366

Description Uncharacterized protein
SequenceLLEVLSKLPITIDVLTKTRIGMTINDLRKKTSDEKLAKKAKNLIKEWKNLVDKREDKKEKAPKNEPSSSSSSKNGTVPNQQVPKPPLTPSQHYSTNFPPKHLENDEVRLKSAQMILNALRHTDLPDGTLDPEEIAVRVEEKLFSVHKGTGDKYKAALRSRVFNLRDKKNPALRENVLTGVVKPEKFAVMTSEEMASDEVREMRDKFNKAAILEHQMSVQTGTVIQLFASYCLLGVLVMDLISGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC
Length289
PositionUnknown
OrganismHeligmosomoides polygyrus bakeri (Parasitic nematode) (Heligmosomoides bakeri)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmosomatidae> Heligmosomoides.
Aromaticity0.06
Grand average of hydropathy-0.578
Instability index40.92
Isoelectric point9.24
Molecular weight32646.40
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08366
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.67|      17|      19|     127|     143|       1
---------------------------------------------------------------------------
  127-  143 (28.51/21.98)	GTLDPEEIAVRVEEKLF
  148-  162 (24.48/17.83)	GTGDKYKAALR..SRVF
  179-  194 (21.68/14.94)	GVVKPEKFAVMTSEEM.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.15|      12|      25|     216|     227|       3
---------------------------------------------------------------------------
  216-  227 (20.71/14.40)	MSVQTGTVIQLF
  238-  249 (22.45/16.14)	MDLISGTPSDMF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08366 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) WKNLVDKREDKKEKAPKNEPSSSSSSKNGTVPNQQVPKPPLTPSQHYSTNFPPKHLENDEVRLKSAQMILNALRHTDL
47
124










Molecular Recognition Features






MoRF SequenceStartStop




1) KAKNLIKEWKNLV
39
51