<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08358
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MAINGGSLEDCFSNVYALTELNGLKWRCFLTPSNSPRGVPIQSDPILKAYGQCLRDGLLCTWRRKPLQMSSQPEPLPLPSFTNEISKELWLFWYSNDPPEKLSINTSHLDADENGVGSAANGINYEVRVLLFQALHTMIERSMAHDGFVRFGRWFTRPLQLPQMKYLHTLPVFSYIMATNVQFFVHGGNTVCMTVNAQRQPPLLRLSKRHLECGRRVQVVVGPWSLHAVLLPMGTEVGRNQPSAEKQWEEWREFVAPLVRDIDEPEEESLVIAHASLTERFSGPVEDGIPRMVPVEIDGIRMLYPSCYVCVTMEDDAACLKEEPEAPAMTPDELISELISLLENCRTLLTYSFQPQTMVAGISYWSQMPTAIPTCRDTILDLHFDSVFDACPICSCNTSIRARELGLYITPPDVLRMPAHVQQAQIGSWSGFALEQANTCTCGFSAVRHRYLSLCSGLFPEDSREATAIEHSVAPVNGLGEVGLQASSQIWFDSTSSTDVNMLDLLRIMCQQHNMGRMVHQIKHFQPQEVGFDVSSNAEYVLSQVDATELMLIGNSAAEMSRSGFSVFSGNRSRNTNQPILQFFHPWGLQVFGELYAEWRGLLSEIGPILERAMRVVRCMPGTPGNIVEGPLTWRALTNKSLPKAAAPGHDEDISLPEPIPYINVAAEKDAIRAAPHVVRHWEHLSLGPIDQPKDVLYLAVVPDNVDICSLAVKYMEQLSQMYERMRLGRHIAMPTGGESRDGCVRVGSRTQTGKYPTETTTLDFLNLVSRYVDNKAFMTKLRVSSSFSAWSRFFLVRVFQLFTQQMEENVLQLVSERDDIFERATYRETLALDWRAKRAAAAAVALAVEQRMAESTWKLRLISAKSTVFAGSAEQGVTVAAPEPPPAEPPLEPEDIPVDEPGTLPHVIVIYVFNPFTWGTEFRSALFTRVATLAVMRAFNTVCLRLPPNRRPQLQLEIIPMEQVTDLLGCLPDYTNDSGASQYLLFPRDLNSVFQNTVMSVYTQPRVLTADCIKSVQARCMTKFGPGSSLLDSLDEWERGGTNVYYKVPSNAYHLAPPPLLYQKHENGRVIQTCPDEQVLYVTYCVTGSDWLCVAVTDSLGRLNDNCLINLRTRIYKYRQQTQILDAMGRLWTYILGVLSMETRNWRLVIGRLGRIGHGEFKAWTYLLNKTALKRHSARLKEVCTACAQMPGCTGTPSILSACLVSTEPEPYLRMFPGFTFNDAYNSFSSFVFSKKVRSALPDDTNVTHIMVFPTIRSILQLGSADQHAVGEDDWDFSDMDIPICMHEIISSLLNPNASFRNAGNSFFSENTADVSMENQPLATGFYVSTAPAADVPDWFWASCPGAKNRTPVHLKSSLHINVPLVHQGDEFLQGKSATGEKQEKESVHPLDSTRTDEVLRHVLETYNALSWLNVDVVSGERRSCLPIHMQALTRLYHSVTRLIM |
Length | 1446 |
Position | Middle |
Organism | Heligmosomoides polygyrus bakeri (Parasitic nematode) (Heligmosomoides bakeri) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida>
Trichostrongyloidea> Heligmosomatidae> Heligmosomoides.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.156 |
Instability index | 45.80 |
Isoelectric point | 5.75 |
Molecular weight | 162152.61 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP08358
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 172.53| 50| 313| 914| 1117| 1
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857- 906 (89.27/53.81) TWKLRLISAKSTVFAGSAEQGV..TVAAPEPPPAEPPLEPEDIPV....DEPGTLP
918- 973 (83.27/245.77) TWGTEFRSALFTRVATLAVMRAfnTVCLRLPPNRRPQLQLEIIPMeqvtDLLGCLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.68| 14| 80| 1218| 1231| 2
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1218- 1231 (28.21/20.31) PGFTFNDAYNSFSS
1297- 1310 (27.47/19.56) PNASFRNAGNSFFS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 104.14| 22| 80| 289| 310| 3
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36- 53 (24.85/12.55) .PRGVPIQSDPILKA.....YGQC...
289- 310 (43.27/27.79) IPRMVPVEIDGIRML.....YPSCYVC
368- 394 (36.03/21.80) MPTAIPTCRDTILDLhfdsvFDACPIC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 121.51| 35| 361| 738| 773| 6
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738- 773 (57.31/46.38) GESRDGCVrVGSRTQTGKYPTETTTLDFLNLVSRYV
1102- 1136 (64.20/46.90) GRLNDNCL.INLRTRIYKYRQQTQILDAMGRLWTYI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.14| 19| 318| 321| 339| 11
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321- 339 (34.63/20.49) KEEPEAPAMTPDELIS..ELI
640- 660 (30.51/17.17) KSLPKAAAPGHDEDISlpEPI
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