<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08321

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMMQQQSAGAGRGMMMGQTQGGGYMGMPNVPSQSGPTAPVSLLHQSFRNPNWPPNFITPDNVLDYFCDPGNVFYDVSSCNQHIKMQNLNRPLHECLQSMQGIQYTVVGACPPLYVILKQRRNSPTNDSLRMALEQARQYCRYSAGRGYYWEFKESEGETTKKAPKEEEKPQLARSTYYHRTRTDPMLRELFAKFPPPDNIVCFFLPKADATAAGGSAADKSAPTASATGQDAKPTEDASSAAQKATFASPSSVPMIPPHRSTGEASGGPLSFPGTAAPLSTPANPPQETDFKRFKTG
Length296
PositionHead
OrganismGongylonema pulchrum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Spiruroidea> Gongylonematidae> Gongylonema.
Aromaticity0.09
Grand average of hydropathy-0.648
Instability index60.67
Isoelectric point8.67
Molecular weight32252.94
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364143

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08321
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.34|      59|     133|       6|      65|       1
---------------------------------------------------------------------------
    6-   65 (107.73/48.28)	SAGAGRGMMMGQTQGGGYMGMPNvPSQSGPTAPVSLLHQSFRNP...NWPPNFITPDNVLDYF
  142-  203 (102.61/43.06)	SAGRGYYWEFKESEGETTKKAPK.EEEKPQLARSTYYHRTRTDPmlrELFAKFPPPDNIVCFF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.14|      25|      25|     234|     258|       2
---------------------------------------------------------------------------
  234-  258 (45.01/20.99)	TEDASSAAQK.ATFASPSSVPMIPPH
  261-  286 (42.13/19.22)	TGEASGGPLSfPGTAAPLSTPANPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.82|      29|      32|      75|     103|       3
---------------------------------------------------------------------------
   75-  103 (54.88/40.07)	VSSCNQ..HIKMQNLNRPLHECLQSM..QGIQY
  106-  138 (42.94/29.80)	VGACPPlyVILKQRRNSPTNDSLRMAleQARQY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08321 with Med6 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGGSAADKSAPTASATGQDAKPTEDASSAAQKATFASPSSVPMIPPHRSTGEASGGPLSFPGTAAPLSTPANPPQETDFKRFKTG
212
296










Molecular Recognition Features






MoRF SequenceStartStop




1) ETDFKRFKTG
287
296