<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08317

Description Uncharacterized protein
SequenceMTTNGGSLEDCHTNVFALQDPVLSAYAKCLQAGILCAWRRQPPQPTGTLAALQLPDYRIDVVKELWVFWYSQEEPSCLTEFTNHLACAEDGQGNWSVPGIQYETRTLFFKALHNLIERNLLKNGYIRIGKYFTRPYEVPSSDRIQCSPSYVLGISFNFFVHGENTVCATVSAQRQPTLFRLSRRHLSLGKKQSVILGPWSMRAILLPDQPRIIEPSMPQQQPGIEQSGNFPSTAMQFPSTCREAPPMQAVPHQTDPMACSSHGPGTISKAVVDKLWAEWLQFFCLIVNDERNVSATDTVGHAGCSGISSSSSSAKNGGMPKMVLVDVDGVHMWYPSSLIVVQASDDLLMRLFHEHIFWVKWKIFWENAEVLQV
Length373
PositionMiddle
OrganismGongylonema pulchrum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Spiruroidea> Gongylonematidae> Gongylonema.
Aromaticity0.10
Grand average of hydropathy-0.155
Instability index50.84
Isoelectric point6.41
Molecular weight41806.37
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08317
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.79|      31|      31|     203|     233|       1
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  175-  208 (45.99/29.09)	QPTLFRL..SRRHLSLGKKQSvilGPWSMRAILLPD
  209-  239 (57.23/38.08)	QPRIIEP..SMPQQQPGIEQS...GNFPSTAMQFPS
  240-  266 (33.57/19.16)	TCREAPPmqAVPHQTDPMACS...SHGPGT......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.01|      37|     205|      61|     100|       2
---------------------------------------------------------------------------
   61-  100 (66.95/50.79)	VVKELWVFWYsqeEPSCLTEFTNHLACAEDGQGNWSVPGI
  271-  307 (68.07/43.97)	VVDKLWAEWL...QFFCLIVNDERNVSATDTVGHAGCSGI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08317 with Med13 domain of Kingdom Metazoa
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