<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08299

Description Uncharacterized protein
SequenceMPGSFSPSFSTLATTKQNRNHHHKSSSSSSPSSSHSDSALLHISTNNVRQQQNNQQRPVSVPPAIFPVLAELDERLVTNFTSEMGAEDKKSSTSVTPTMSALLGRQPTINEDEDEADLTMTGTNGAARRRAVEEEESPDFGVATVVSGFGIKKEPPEEIIMLEEDGQKRYALSHRKSSLSATRFVGKAMDDECREGVAQGIHSTQLKREEDDAMGAEQRQRDEDAAELGADAAARLAARQRKREPVVVGWRTLERTMRATSDDNSGGMSPLEQYLLGTTLLARLCSFFEMAFAEALRPQRQAHPDQRGKFKFNLPIKEYEVGADGVMSATFPSYPMPISPPLSSAVPSALGSPGDHSSGHQQLSALCMVRLQLLVCPQEFRLIAKLNYTGIQCPAESDVRVFERFFARSVVQLNNEMAVFTFVTLCRLCYPPMFASFAQLMMAQMEPQPRWPWRADLELVHIQTDELSQQQPAGPGGQTTATGTGTNFQQQQQQKIQKIVKNSVVVPDMCKRFLFIISLKPRGPNAANYQPPQHQYGGKRAQQQTNSDRHLLTMHYDVDLDELTLHKPDQQQYQKMSSEEIQAIENVLKTELCRQSVVDPSKQQHRVLRSCCIWPCIRALLEGHHHQQQQVPLMSLGLQQIQGVL
Length645
PositionTail
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.06
Grand average of hydropathy-0.541
Instability index59.09
Isoelectric point6.36
Molecular weight71919.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08299
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.79|      25|      56|     563|     588|       1
---------------------------------------------------------------------------
  563-  588 (39.82/27.07)	LTLHKPDQQQYQKMsSEEIQAIENVL
  621-  645 (45.97/27.15)	LEGHHHQQQQVPLM.SLGLQQIQGVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.91|      26|      57|     361|     386|       3
---------------------------------------------------------------------------
  361-  386 (44.09/26.35)	QQLSALCMVRLQLLVCPQEFRLIAKL
  415-  440 (47.82/29.14)	NEMAVFTFVTLCRLCYPPMFASFAQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08299 with Med14 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ECREGVAQGIHSTQLKREEDDAMGAEQRQRDEDAAELGADAAAR
2) LVTNFTSEMGAEDKKSSTSVTPTMSALLGRQPTINEDEDEADLTMTGTNGAARRRAVEEEESPDFGVATVVSG
3) MPGSFSPSFSTLATTKQNRNHHHKSSSSSSPSSSHSDSALLHISTNNVRQQQNNQQRPVSVPPAIFPV
192
76
1
235
148
68










Molecular Recognition Features






MoRF SequenceStartStop




1) PGSFSPSFSTLAT
2
14