<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08296

Description Uncharacterized protein
SequenceMSEGGAEKSGSKGGFNTKKFALDLVSGGTAAAVSKTVVAPIERVKLLLQVQDASAHITADQRYKGIIDVLVRVPKEQGFLSLWRGNLANVIRYFPTQALNFAFKDTYKRIFTEGLDKKKQFWSFFVMNLASGGAAGATSLTFVYPLDFARTRLAADVGKAGSREFNGLAHCIAKIFKSDGPIGLYRGFFVSVQGIIIYRAAYFGCFDTAKMVFAPDGKQMNFFLTWAIAQVVFGRGTIFAGAGSREFNGLAHCIAKIFKSDGPIGLYRGFFVSVQGIIIYRAAYFGCFDTAKMVFAPDGKQMNFFLTWAIAQVVTVSSGVLSYPWDTVRRRMMMQSGRKDIMYKNTLDCAIKIIKNEGLLKGMFKGALSNVFRGTGGALVLAFYDEIQKKFKLRHYSRFLLLSSNAMQSNRSQLPLSVFGGSGNSVLSAGKDLSSARRPTSQYQSTECVLFGSIFSDNKDQLMQRLKGLCDPDGPTSFFEHNMVFKLKTGLESPVQVQMRRRFRVDALHWHCRYVSQPEAHIKASWDVVVRKVIDSLIYSTDMMSFVKSLGLRMEYEYIANGFLFTKGDIRLQCSDTIGNYNKLKQFCDSFLVEASILLPGHGLEHLQPASKSLKEFADQLHPLCKLTFVDYGRGD
Length636
PositionHead
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.12
Grand average of hydropathy-0.004
Instability index25.56
Isoelectric point9.61
Molecular weight70779.17
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-UniRule
mediator complex	GO:0016592	IEA:InterPro
mitochondrial inner membrane	GO:0005743	IEA:InterPro

GO - Biological Function
ATP:ADP antiporter activity	GO:0005471	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
F:ATADP antiporter activity	GO:0005471	IEA:InterPro
mitochondrial ADP transmembrane transport	GO:0140021	IEA:InterPro
mitochondrial ATP transmembrane transport	GO:1990544	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08296
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     439.42|      81|      81|     161|     241|       1
---------------------------------------------------------------------------
   61-  136 (113.47/57.77)	..QRYKGIIDVLVRVPKEQGFLSLWRGNLANVIRYFPTQALNFAFKDTYKRIFTEGlDKKKQF...WSFFVMNLASGGA.AG
  161-  241 (167.45/88.26)	GSREFNGLAHCIAKIFKSDGPIGLYRGFFVSVQGIIIYRAAYFGCFDTAKMVFAPD.GKQMNFFLTWAIAQVVFGRGTIFAG
  243-  319 (158.49/83.20)	GSREFNGLAHCIAKIFKSDGPIGLYRGFFVSVQGIIIYRAAYFGCFDTAKMVFAPD.GKQMNFFLTWAIAQVV....TVSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.41|      35|     112|     477|     513|       2
---------------------------------------------------------------------------
  477-  513 (57.07/57.60)	SFFEHNMVFKLKTGLE..SPVQVQMrRRFrVDALHWHCR
  590-  626 (56.34/45.01)	SFLVEASILLPGHGLEhlQPASKSL.KEF.ADQLHPLCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.10|      22|     113|     450|     471|       3
---------------------------------------------------------------------------
  450-  471 (40.67/26.75)	LF..GSIFSDNKDQL..MQRLKGLCD
  564-  589 (32.42/19.94)	LFtkGDIRLQCSDTIgnYNKLKQFCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.53|      16|     185|     144|     159|       5
---------------------------------------------------------------------------
  144-  159 (28.44/19.46)	YPLDFARTRLAADVGK
  323-  338 (33.09/23.83)	YPWDTVRRRMMMQSGR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08296 with Med18 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA