<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08294

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMEVSLKEQLSDVVNELESVTKQILQNLFADIKKDAQEKSPDEQLKALIESFNDKQSGLVILLKNVPTHQQRQRHIRSLQEGVQRRDGIIGKLADQIKSIEGSVIEATYQAEKKLKSVKQSEMNRVFSEDVIRFAHQISKNHSVASSVYWQQGDPSRPYPTEANFALSNLLLSRTQPNVPLTFASQTASGGMLKSVFNVPGMPQKAFSPSPRLAMFGANMGASTSSASPRGRPSGTGARMASPSTRPKILQRSSSQQSPRFSQLGGLPGQQQPSLIQPSPNSLSMVQPPQSSSNFVSPVGQMMVNLPTNLKPPAPDVQKSEFGLSDPDILQDLRNYRRFSTRNHSSKVELFAQSAPTVTGRKRSQSRHIGQNGRTEEIRNCSAAIGETAKKQKAAEEEKHSDSLIQLKFFSFDKFKGKCEGFDEDFKELKNKREEIETNLRTLIVFTLN
Length448
PositionMiddle
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.06
Grand average of hydropathy-0.655
Instability index67.82
Isoelectric point9.69
Molecular weight49724.65
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08294
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.88|      15|      17|     196|     211|       1
---------------------------------------------------------------------------
  196-  211 (25.49/14.96)	FNvPGMPQKAFSPSPR
  215-  229 (23.39/ 9.68)	FG.ANMGASTSSASPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.13|      34|      38|     250|     283|       2
---------------------------------------------------------------------------
  250-  274 (36.31/13.66)	..............Q..RSSSQQSPR.FSQLGGLPGQQQPSL
  275-  313 (52.67/22.56)	IQPSPNSLSmvqppQ..SSSNFVSPV.GQMMVNLPTNLKPPA
  316-  355 (33.15/11.94)	VQKSEFGLSdpdilQdlRNYRRFSTRnHSSKVELFAQSAP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.56|      37|      39|      70|     108|       3
---------------------------------------------------------------------------
   57-   85 (24.48/11.84)	...............GLVIllknvPTHQQRQRHIRSLQEGVQRR
   86-  124 (50.37/43.08)	DGIIgKLADQIkSIEGSVI.....EATYQAEKKLKSVKQSEMNR
  128-  148 (24.71/12.66)	EDVI.RFAHQI.SKNHSVA.....SSVY................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08294 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SPSPRLAMFGANMGASTSSASPRGRPSGTGARMASPSTRPKILQRSSSQQSPRFSQLGGLPGQQQPSLIQPSPNSLSMVQPPQSSSNFVSPVGQMMVNLPTNLKPPAPDVQKSEFGLSDP
2) SSKVELFAQSAPTVTGRKRSQSRHIGQNGRTEEIRNCSAAIGETAKKQKAAEE
207
344
326
396










Molecular Recognition Features






MoRF SequenceStartStop




NANANA