<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08293

Description Uncharacterized protein
SequenceMDDSNAPTSYSAAAVFPPSTAIEECSAQPTSFNFLCVGNEAEKLKWLVLNHVKPNTLKKMFAPLMTTKKCVLNRADDLVCVQACMLFRSLEPSESDRNRQPVELEQVCYSLIGLLSTEKTYLNALDRIITQIIMTAYNNNIITLLLTCQLLVASIDFRMKIPLNPEKIKFVRKSMDQLDYKNMRDLLKLLLVEKLDKMQCQLTEHQQRHLAPIESLVIDLIDRSKNYCPALFFITEISRIDPCHSSIHFLPRVSWKIREMVASFRPLAEIGSMLGRSWMWPVPTSPCFSWGSQTSSAWKLDEKQCKLYFKTHLPYSSENTTPQTYLQYILFKQPHGQDNLNHILRSANSMTPTPRIQCDEVIQLLILEAMCAMEDSEQPVLASINQYNWLHLSHLVTHALFMQNCTLSELLKMLLPQLRSCQYLRAKEELMWILLQLVAHARSREKNLVHQQQQKKLKTLIDFIEQQLDSSKPLDKTLALLAVIANSYSNSREVFEEHVSTAVFRILGFNAQHQQGPSHQPEKFWCLPGGRRTEHNLRALDLTFLDSLTFHAKMQIYKSTFRVFGYLFSNPNFASLRLPTPALAESTARLLLSTELIDLNGSIFYSYIFTALKSANTIPNTAPEQQLYFARNDLLAMFLELLNFRLQNIGFGWKWTLDQRLQFFFLVLDSLNRGPLSVSPCPSSNALQLCFLLEQIIQRFVQCTWPQDLLNATQCLMKMMPGWMMAMPEYCRLFQLAAFRAAKLLGADQLQFSSQDLGQRWSLSELRWFPPNILHAIVPSESDLTQLEQMQATQQAQAMMELHNMANQEMQRLMQLDAEYFGLDSPPNHPPAPSLLVSIFRCLHDYTTVHPQLPHGKQPHPNAPNFLALCYKLLSLQSNRDLHRSTNALVDYLVWKHQGSTQQGPSGMLADDALSHQQLDLRMVAVLNDMLFVHQFISVERFLLSLALHPSDDSSIRTSLFLLATLLDKFSSFSDRLHAVLCPNCRLFQEYSYAELYRKTMMDPAYQQSQEQPRDPHNLPIYYGHLADRIIPLIDVILQRALEVDVGSKVLDTFLRHFAHLYRLHPQPMTFLYKTLYTLDAFHRDSAVGRQIIRKFVLSIVLKLEQDEGNHGTRGGAGYQCKLLTAEFMLRDHDMPAIRFCRVLVERIVQASTYTHQPPQFVHKDWRFAEYPPAGQALTSAWVEILATNHAPPAIVDALVELAIRRPIFRPQDTLNALGLLLTGLPSAFQTLLLDRVEESFEWPQIAAADADPSQLFESLSHEVYLHSDSRILSMLALIHSFCQHGGNNSLSIIPDLVVKRLAHKVENEAQLVYFLRIVVPYLQRIHEKERNKHMPEIVAIYTVLGNLVQKVGRLKYEDTICDLLYQFKYMFVGYSLKEQTEMAIRNFPDSMREKLKFLFTHSSAAAAAESQQQVHQILHHQQQQLQHQSSQWSMSSVPSGGVPLTSAGHPSLLPSGSFPPLPPLQQPAALVGMLQRQKYGEEGERQQQQHQSGGPSVSIGSGAAQQQQQQQINLNQHPQQLGSMIGGSATNQQQPIPTPMSVSSVSSAAVSPNLMVPFAAPSSSPVEPCTPTSSAVSQNPQQQIVPPPPPYQMHSMMMSGTLAGAMPLHNIAFPPSSSGAGIPPSVASTAQQQPSMVMHSHALPSHHHLHQQQMVSSTQFQQQQQHLMMQQQQMSNPFGSSPNATAEGLSPGIFLPMGFQPHQQMQSHQMTSEHQQPPDATMSQQSFPSHFTQSGPSGCVPSYHRPGMRIELLQSPSMPPSPLSAGISFLPIAFLLMCSLLLYPLAFLPVSATPFDRFPLSPSGIYRLRTDTLGDYQKKLQLLDGRVNALDDSKTPKKTRKLRLAEMLKKNGFRDEAQLEYLRHVVKWELEERQKARSGI
Length1881
PositionTail
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.08
Grand average of hydropathy-0.215
Instability index52.82
Isoelectric point7.51
Molecular weight213115.11
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08293
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     430.07|      96|     104|    1434|    1536|       1
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 1404- 1491 (114.96/67.29)	..........S..AAAAAESQQQVHQI...LHHQQ..........QQLQHqssqwSMSSV........P..........SG.GVPLTSAG....HPS....L.L.....PSGSFPPLPPLQQPAALVGMLQRQkyGeegerQQQQH
 1492- 1575 (111.40/51.22)	QSGGPSVSIGS..GAAQQQQQQQINLN...QHPQQLGSMIGGSATNQQQPiptpmSVSSV........S..........SA.AV..........SPN....L.MvpfaaPSSS..PVEPCTPTS...........S..........
 1576- 1667 (111.09/52.14)	.....AV.........SQNPQQQIVPP...PPPYQMHSMMMSGTLAGAMP...................lhniafppssSGaGIPPSVAStaqqQPS....MvM.....HSHALPSHHHLHQ.QQMVSSTQFQ........QQQQH
 1671- 1763 (92.62/40.56)	QQQQMSNPFGSspNATAEGLSPGIFLPmgfQPHQQMQSH..QMTSEHQQPpdatmSQQSFpshftqsgP..........SG.CVP..SYH....RPGmrieL.L.....QSPSMPPSP............................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     202.16|      74|     102|     231|     332|       2
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  194-  287 (111.40/97.38)	KLDKMQCQLteHQQRHLaPIESlvidLIDRSKNYCP....................................................................................................................................................................................................................................................................................................................................................alffiteisrIDPCHSS....IHFLprVSWKIREMVASFRP..LAEIGSMLGR...SWMWPVPTSpC
  299-  327 (31.66/12.12)	KLDEKQCKL..YFKTHL.PYSS....ENTTPQTYLQ.......................................................................................................................................................................................................................................................................................................................................................................................................................
  678-  731 (59.09/20.04)	....................................yilfkqphgqdnlnhilrsansmtptpriqcdeviqllileamcamedseqpvlasinqynwlhlshlvthalfmqnctlsellkmllpqlrscqylrakeelmwillqlvaharsreknlvhqqqqkklktlidfieqqldsskpldktlallaviansysnsrevfeehvstavfrilgfnaqhqqgpshqpekfwclpggrrtehnlraldltfldsltfhakmqiykstfrvfgylfsnpnfaslrlptpalaestarlllstelidlngsifysyiftalksantipntapeqqlyfarndllamflellnfrlqnigfgwkwtldqrlqffflvldslnrgplsVSPCPSSnalqLCFL..LEQIIQRFVQCTWPqdLLNATQCLMKmmpGWMMAMPEY.C
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.04|      20|     104|     642|     664|       3
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  642-  664 (30.43/28.54)	LNFRLQNIGfgWKWTLDQrLQFF
  750-  769 (38.60/22.67)	LQFSSQDLG..QRWSLSE.LRWF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.40|      43|     220|     908|     965|       4
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  908-  953 (46.72/41.23)	.....M..LadDALSHQQLDLRMVAVLNDMLFvhqfisVERFLLSLALHPSDD
  961-  988 (41.24/25.79)	FLLATL..L..DKFSSFSDRLHAVLCPNCRLF.....................
 1071- 1107 (52.44/21.05)	FLYKTLytL..DAF....HRDSAV...GRQI.......IRKFVLSIVLKLEQD
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.05|      23|     221|     810|     844|       9
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  820-  843 (41.76/32.08)	YFGLDsP..PN....HPPAPSLLVSIFRCL
  846-  874 (36.29/ 6.78)	YTTVH.PqlPHgkqpHPNAPNFLALCYKLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.46|      15|     290|     434|     453|      15
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  434-  448 (22.60/16.52)	LLQLVAHARSREKNL
  460-  474 (23.85/ 6.21)	LIDFIEQQLDSSKPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.84|      15|      25|    1293|    1313|      28
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 1293- 1309 (20.24/28.10)	IIPDLvvKRLAHKVENE
 1319- 1333 (25.60/12.67)	VVPYL..QRIHEKERNK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08293 with Med23 domain of Kingdom Metazoa
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