<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08287

Description Uncharacterized protein
SequenceMLFLEYKIAIQTLECFERRSFAACNRVDVLRVENISKAQAIQRAGRAGREGPGKCYRLYSLEDYNRLADEQEPELQRCRLTTVLLELVELGVEKVSSLVHLLSPPNIDQLRAAVEELLALSAVTLSATGHLKITEEGSQLLAFPVEPAHAKILLAASELGCLEEACTVVSFMSADPVFQFSGHDLFCLNEKQKFGQEDNTGLSGGLNMKFRTNEGDHARMVQIYRAFTSVKRIQEKMKEFCESNNLNQRRMEQVWSIRKQLHEECLKHKLHFSTSANNMELLRRAICRGLFMNLCRYDTSIQCYVLDRDRKVHVRIHPSSCLHNQRPAAFVFTELMHTNEVYARDISLVQTEWVHESGTDALRGDPKLLERVHCLQMVTPQPTRTPLPSTSAVAATVASSFPSPAATQMPPIKSKRKKRRKMLKVFIFELCNFGIRAHTCTMFPHQQPSVSVNQQSVDFVPAAMDPAVMAAQMQAARTQSGDLDTIAKKVRTDRIALEQPWKDPRFFPITPENVMSYFCLRENPFFDPNSDNAMILMRNPNIGPAQLDAILKTTTGIQFVLVEPCSPPLFLVRKQQRSGPDKISPLCHYYVLDGTVYQAPDMHTLLHSRLIGVMDPLRCAFQEAAPRASTVAAAMTDEAENGGGEMAETDEKFETDTAAEGHKRTASRCGDPLAVRATPYQSQRTHALLAALSERFRSGDDDDGSGKGAGSAAVGGTSKMKADSPPMSSASSAPLTGDAQQPPTTTTAFPSPLISVSDFQGLLFASSFQQQHSIEGGVDDPSGGGGGGESAAVE
Length794
PositionHead
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.07
Grand average of hydropathy-0.311
Instability index51.70
Isoelectric point6.45
Molecular weight87669.95
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
helicase activity	GO:0004386	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.38|      25|      76|     688|     714|       1
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  688-  714 (41.30/30.71)	LLaaLSERFRS.....GDDDDGSGKGAG..SAAV
  762-  793 (37.08/21.43)	LL..FASSFQQqhsieGGVDDPSGGGGGgeSAAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.40|      14|     265|     398|     416|       2
---------------------------------------------------------------------------
  398-  411 (28.82/10.31)	ASSFPSPAATQMPP
  730-  743 (25.58/ 7.84)	ASSAPLTGDAQQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.46|      37|     264|     265|     338|       3
---------------------------------------------------------------------------
  265-  307 (64.87/125.58)	CLKHKLHFSTSANNMELLRR..........AICR...GLFMN.........................LCRYdtsiqcYVLD
  519-  593 (44.59/17.19)	CLRENPFFDPNSDNAMILMRnpnigpaqldAILKtttGIQFVlvepcspplflvrkqqrsgpdkispLCHY......YVLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.77|      15|     216|     465|     479|       4
---------------------------------------------------------------------------
  465-  479 (27.72/17.22)	DP.AVMAAQMQAARTQ
  671-  686 (25.05/14.88)	DPlAVRATPYQSQRTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.85|      20|      28|      96|     115|       6
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   96-  115 (33.77/23.27)	SSLVHLLSPPNIDQLRA.AVE
  126-  146 (29.08/19.03)	SATGHLKITEEGSQLLAfPVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08287 with Med6 domain of Kingdom Metazoa
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