<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08281

Description Uncharacterized protein
SequenceMDDSVELIGALEDMRVNIDLLTKTRIGAVLNEFRKKIKDEKLAKRCKALIKRWKSLLDEKLSMRSKSPDERHSSQEKSTTPPSASHTDSSNKQHQQQQTTTADHQMLQQQHQNNRVLPPSSNGIAATVGRGNMDIIRVKSVQMLANAFSSGGMPDGSSDATDVAGRVEKKMFDHHKGTGDKYKAALRSRVFNLRDKKNQALRENVLTGAVSAEKFAVMTAEEMASEEMKKVREQLTKETILEHQMSVQEGTPTDMFKCHKCGSNSCTYSQMQTRSADEPMTTFVFCRSCGNRWKFC
Length296
PositionUnknown
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.04
Grand average of hydropathy-0.787
Instability index51.57
Isoelectric point9.25
Molecular weight33277.47
Publications









Function






Annotated function


	RuleBase:RU364059

GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP08281
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.99|      11|      16|       8|      18|       2
---------------------------------------------------------------------------
    8-   18 (19.82/13.20)	IGA.LEDMRVNI
   26-   37 (15.17/ 8.71)	IGAvLNEFRKKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.36|      31|      34|      75|     107|       3
---------------------------------------------------------------------------
   75-  105 (56.08/23.86)	QEKSTTPPSASHTDSSNK.QHQQQQTTTADHQ
  248-  279 (53.27/22.27)	QEGTPTDMFKCHKCGSNScTYSQMQTRSADEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      14|      34|     117|     130|       4
---------------------------------------------------------------------------
  117-  130 (24.21/16.47)	LPPSSNGIAATVGR
  153-  166 (24.82/17.05)	MPDGSSDATDVAGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08281 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLSMRSKSPDERHSSQEKSTTPPSASHTDSSNKQHQQQQTTTADHQMLQQQHQNNRVLPPSSNGIAATVG
2) LANAFSSGGMPDGSSDATDVAGRVEKKMFDHHKGTG
60
144
129
179










Molecular Recognition Features






MoRF SequenceStartStop




1) RCKALIKRWKSL
45
56