<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08280

Description Uncharacterized protein
SequenceMVSVKINKTEMPDIPKQHNVEKYTKPLAFKDLLRKNARNIDWSKIIGEEAIFDTAIKKRDSEDQLDETSNELAQPSKSLVEPVAGPWALVAKHLHYSLQEVNVMLDCMRIARTDYLNTLVTALVQDERAEAEQVAASKAFHLHTRRRVLNETSKDIERMATARLGVVSVGSDKSDFFNELRELRENWRIRKVGPNIFGDLGYKTFAPKFSPHEVFDVTQKSASNRRESTIRFSNKSFIELRLPQHLRCRTELLVFIETDDEKSAESLFKVTNRLSTSEEEVKHVHWRKALPWAQDSLICRDILARLVSESVSQQDIITLTTENSIVISLFDSLLLKVETRFRPFEACRTQSTYLSQCLRQLFLAEHSKKTKRIQQFVTLPFTSLIRISDSSITLISKESQQIECRRDMEMFENALLLLAAHFLLNSSQVLSRAYGWQLFHANSNAFDLAGNFAPTFYACNQNGTMTIFIQFHADGSSPSIFMKDNKKTLLCLMNITVFFVAYFGFMVPVLWAKPLWPRFYWFYEGKLYMWMQAFIAYWGYTADYDVYEYGEDIRRFAEKDRVLVIINHQSTADVPTLFTILQNKGVATRKTLWLMDVMFRWTPFGIIGRMHGDYFIQQGKATRDKELIRLKQHLRKVFWDRDRRWVVLFPEGGFFYKRKETSQRYARENGFPNLEHCTLPRMGAIKAVLEEIGPREEENGLARSASTSSKMKLIKDTVGAIREKKYVKDTRPPIQYVLDVTIAYPNGQPLSIGTLCFGTREQCDIAVHYRMFDAEQVPFRDEIALRDWLYNLYSEKDLLLDNYYKTGEFTPGEEGERIVFDWLRIVGQWAFWITAFVLQVKFAVWAVRTVFYTIFGFVCIIWACRITALFGRVV
Length874
PositionHead
OrganismGlobodera pallida (Potato cyst nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Tylenchomorpha> Tylenchoidea> Heteroderidae> Heteroderinae> Globodera.
Aromaticity0.12
Grand average of hydropathy-0.240
Instability index45.66
Isoelectric point8.86
Molecular weight101696.87
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
transferase activity, transferring acyl groups	GO:0016746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.68|      15|     350|     496|     512|       1
---------------------------------------------------------------------------
  496-  512 (24.12/23.04)	TVFFvAYFGFmVPVLWA
  849-  863 (31.56/18.96)	TVFY.TIFGF.VCIIWA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.03|      17|      59|     171|     190|       2
---------------------------------------------------------------------------
  171-  190 (23.71/22.42)	SDKSdfFNELReLRENWRIR
  233-  249 (33.32/18.27)	SNKS..FIELR.LPQHLRCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.29|      11|      45|     589|     601|       3
---------------------------------------------------------------------------
  589-  601 (18.80/19.69)	RKTLWLMDVmfRW
  635-  645 (24.50/15.97)	RKVFWDRDR..RW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.15|      32|      59|     314|     348|       4
---------------------------------------------------------------------------
  314-  348 (45.32/37.26)	QDIITLTTENSIVISlfDSLLLKVETRFRPFEaCR
  374-  405 (52.84/31.98)	QQFVTLPFTSLIRIS..DSSITLISKESQQIE.CR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.49|      35|     202|      51|      88|       5
---------------------------------------------------------------------------
   51-   88 (52.17/49.07)	IF.DTAIKKrdSEDQLDETSNELAqPSKSLVEPV....AGPWA
  254-  293 (50.33/34.90)	VFiETDDEK..SAESLFKVTNRLS.TSEEEVKHVhwrkALPWA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.85|      26|      32|     659|     686|       6
---------------------------------------------------------------------------
  659-  686 (38.98/37.36)	KETSQRyARENGFPNlEHCTLPRMGAIK
  690-  715 (42.87/29.59)	EEIGPR.EEENGLAR.SASTSSKMKLIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08280 with Med17 domain of Kingdom Metazoa
Unable to open file!