<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08273

Description Uncharacterized protein
SequenceMASLDLGDTNLKNADLQISPKSNLSDLPSDSILDGPTSLSTQLNAYVEAMRSYAAELCPVDCVIMLERCRPFNCDTSFMKHFREQYLCPILSNLNGGPPLNADFGRDAYTSLYSLHGFYWRKPLDFVTWVPDTPIIYRILKQSTTLQHEERHASDRTESVQGTPGHELVQAAVHAFDAIDRVRRGLCRQVQRHLIILAVSPINLDKLLQSESTDAPPHVNGTDHDSTVGSKLTGPLENLRQRGVALSAFSPVRSPSLLKLYELVNGAPASTFYDRRWQTVALSSKLNLRSSSPLSVECFLCYPINVIPYMLKVFKHTHIYIYIYTYIYI
Length329
PositionUnknown
OrganismEchinostoma caproni
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Plagiorchiida> Echinostomata> Echinostomatoidea> Echinostomatidae> Echinostoma.
Aromaticity0.09
Grand average of hydropathy-0.174
Instability index48.26
Isoelectric point6.82
Molecular weight37038.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08273
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.50|      24|      27|      50|      75|       1
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   50-   75 (42.12/32.65)	MRSYAAE.LCPVdcVIMLERCRPFNCD
   79-  103 (41.38/24.61)	MKHFREQyLCPI..LSNLNGGPPLNAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.48|      27|      48|     191|     238|       2
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  191-  217 (45.83/49.16)	QRHLIILAVSPINLDKLLQ.SESTDAPP
  241-  268 (41.65/12.83)	QRGVALSAFSPVRSPSLLKlYELVNGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.72|      10|      28|       4|      14|       4
---------------------------------------------------------------------------
    4-   14 (14.66/14.33)	LDlGDTNLK...NA
   33-   45 (14.05/ 7.60)	LD.GPTSLStqlNA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08273 with Med25 domain of Kingdom Metazoa
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