<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08267

Description Uncharacterized protein
SequenceMSTHREEDTAAPVDAGPRLEVESNPHLIIRQHLEELLNASKSVPALCKSSFMCTTLRPVRGIVLLALSAYDVVIIYRASLSLRIALSPQRVILATGTLSTVNPPSQETVQIMDAHAQLTDQAALLFRPDLWNNATVDNQLSSLAPLPAFPSFLNSLQEAFQMDIEAEAWTGLTVAQLAQIVRSPRVPTKSATGAKSARPSSGLSTLESYLSSSLLFHAALAAVTSLDVAILPAHLTDPGSVEQLTAESNATRIADILRAGVFISHWIPSNLTALVSLVPQRTGVDVASWRVTIRLSPLSTQLPPGNSPADRWPPETLNLMEKFFDIRVCAAPFQPSAVTAFFRLLVLPPRALRSIVRLIPFDLHPPAHTPIQLRLGLVRLGTNKRTTRGAYAGTSSPHGQPSVDGASTQSPDFIPGLPGILVRPPRITLQLLVLRAAHPNKQGSLAQLISVGYDWDANRVTMLAVCGSPHATGSRTGSTDSVGSNSTSGPGGGGGGGVGGGGGGGGSTTVSSLSQLLLETEVEANANMLASASGESALVQLASLITQTAAASSGTTSTYSGTGSSSNTGTGAGVTSAGGAGAAAAAAAAGGGGGGGSSGGGPSVVAPGSGPNKPLFTSN
Length619
PositionTail
OrganismEchinostoma caproni
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Plagiorchiida> Echinostomata> Echinostomatoidea> Echinostomatidae> Echinostoma.
Aromaticity0.04
Grand average of hydropathy0.087
Instability index44.67
Isoelectric point7.80
Molecular weight63460.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08267
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     329.30|      79|      87|     429|     507|       1
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  342-  423 (96.46/35.21)	FRLLVL......PPRALRS......IVRLIPFDLHPPAhtpiqlrlglvrlgtnKRTTRGAYAGtsSPH......GQ.PS.VDGASTQSP.........DF......IPGLPGILVR
  429-  507 (149.94/58.30)	LQLLVLRA...AHPNKQGS......LAQLISVGYDWDA................NRVTMLAVCG..SPHATGSRTGSTDS.VGSNSTSGPGGG....GGGG......VGGGGGGGGS
  513-  597 (82.90/29.36)	LSQLLLETeveANANMLASasgesaLVQLASL........................ITQTA........AASSGTTSTYSgTGSSSNTGTGAGvtsaGGAGaaaaaaAAGGGGGGGS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     315.16|      94|      95|     112|     206|       2
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   14-  101 (86.33/39.93)	DAGPRLEveS..NPHLIIRQHL......EELLNASKSVPAL.ckSSFMcTTL...RpvrgivllalSAYDV.VI.IY....RAS...............LSLRIAL.......SPqRVILATGT............LSTV
  113-  206 (160.93/86.71)	DAHAQLT..D..QAALLFRPDLWNNATVDNQLSSLAPLPAF...PSFL.NSL...Q..........EAFQM.DI.EA....EAW...............TGLTVAQLAQIVR.SP.RVPTKSATGAKSA.R.PSSGLSTL
  207-  317 (67.90/31.62)	......E..SylSSSLLFHAALAAVTSLD..V...AILPAHltdPGSV.EQLtaeS..........NATRIaDIlRAgvfiSHWipsnltalvslvpqrTGVDVASWRVTIRlSP..LSTQLPPGNSPAdRwPPETL...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08267 with Med14 domain of Kingdom Metazoa
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