<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08264

Description Uncharacterized protein
SequenceMAHFHVGLQLEGRTWTNSCHYVMWFVLNATSGFIGKNMLTDFVPCLRLFDILFPDAEDPDKALELQLPGSRKRPDKRVAESTTEGDISNGRAEDRFTHTPGTDSTTFEVTGRLGDQDKLMSGGDDVGGVVGSTEEVFDQEADQDEYIDSTSAEESEDEFSLDILPPSPHRSTRGRKRQSRLMHLASAPVCLWQHVLRKSRQSHDHLPRVMPPALRPFETRISHRMRALIDSVSNLDSNGPMLSSTSQLTWKQLFVILNAYSTDTEVSPLIQRLVDMFWFAERDDSTASTCPYARLWPKLLNNGLVPLPYGLVARGRLQPLPHHLIRTIVLHLLLQKFAHLQQTDQLTTPAVAETMCRILACREVEPNNVNRILTLLPKLQPVWSAGEPDNPTTQSSAQSTESNANSTSAVNSGSALATCNVLATLLDIIGHRLADTLLPEVRLQTLISLVNLLRVWSAWSAISVVQTSTDDGNLGRDGKFARSPFEVPMELFYNLEWIICKLSRSIQAPDCVIYGLCLAISPALLAQASQSASSFLGGGAALGTGSVLGATGTGPQSVQCAPRNVSGAAARSAAAAGGTHQSCTNPMGSDMGSAGVAMADMSGATGTGVPGGGTVPGYPFLMTDNLELNRFILFSLLQVYYVYAEAESELTAHLHSSPLQKVLFITVTLSLSPFPRNFVLCLITEPTLLPCEYSGIDLLSLSKLSDLKYADDIVLISEDPGKLQAFLDSLSASVAMFECAAAVRPVLLNVAQRIS
Length755
PositionTail
OrganismEchinostoma caproni
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Plagiorchiida> Echinostomata> Echinostomatoidea> Echinostomatidae> Echinostoma.
Aromaticity0.07
Grand average of hydropathy-0.035
Instability index50.25
Isoelectric point5.38
Molecular weight82008.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08264
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.26|      18|      20|      54|      73|       1
---------------------------------------------------------------------------
   54-   71 (30.50/24.72)	PDAEDPDKALELQLPGSR
   74-   91 (29.75/16.01)	PDKRVAESTTEGDISNGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.77|      16|      20|     479|     495|       2
---------------------------------------------------------------------------
  479-  495 (24.86/19.79)	KFARSpFEVPMELFYNL
  501-  516 (28.91/17.31)	KLSRS.IQAPDCVIYGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.03|      30|      61|     348|     407|       4
---------------------------------------------------------------------------
  348-  385 (46.32/82.16)	TPAVAETMCRILACRevepnnVNRilTLLP..KLQP.........VWSA
  418-  458 (42.71/15.80)	TCNVLATLLDIIGHR......LAD..TLLPevRLQTlislvnllrVWSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      20|      53|     534|     554|       5
---------------------------------------------------------------------------
  534-  554 (31.34/26.26)	SFLGgGAALGTGSVLGATGTG
  589-  608 (37.19/25.56)	SDMG.SAGVAMADMSGATGTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.69|      14|      26|     175|     188|       6
---------------------------------------------------------------------------
  175-  188 (25.81/16.68)	RKRQS.....RLMHLASAP
  198-  216 (20.88/12.06)	KSRQShdhlpRVMPPALRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.23|      13|      26|     106|     118|       8
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  106-  118 (23.31/17.13)	TFEVTGRLGDQDK
  133-  145 (22.92/16.72)	TEEVFDQEADQDE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08264 with Med23 domain of Kingdom Metazoa
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