<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08260

Description Uncharacterized protein
SequenceMQLTDSDPSERGTSKPAFHPDPVSSRHWTTCLFRLHELIPDQWMTWNPSFKRDTASACASASSSRSTLLDNANAETRPNPSFPVLYGHMVVRLLPMLEAILAHFIETELPLVRLIPFCRAVTPLFRFHRRPVNTSFVLLREHWHFVPPDADGSNADNQLTWFIGRLRMQLVTHCVLSRTHTLAVHRARSRKLNGPGADIEAQSGLLTQRGWSELCASVEVAKETYTQLLAKYTDEARFWAEAEPELEAMLYDWYNAHVTCADSEFVSTLLNPIILSTHKFGLYGHPAAWRPWNLEENVSIQAAGLYAAAVEIMSSYTTPKEFVAAMTDFLLPGSVGPDTGDCVNVLGALTALLPNAYRMAICQFATSLLVEDVMTNPIGSPDWSNQLDECYNSASQWHRSSRIRRHARWLDPDENESHTDLCPSPPAVAVNFFKDFLPPQQSSADTDKRTTGVELNSKNSKDNSLFTELIVPYLTNEAQLLMAFYLVAPLMGSLHSERAAKLIELTAHLYRAVAQVDALLGMKGGGGAGGPGGESNSAGTDQDAESDTKPKQIGVPMVHVDTVADLLYHIKYMYVGNGVLDQVQPLLPKLRPNLRKRLKFILPPTEMFNAPGSAQSGAQAWTKPSQAFPGEMARAVYEGRPTFDPQVEYAIQAWKPWLQRDREILEHSQSMATKVVKGLEVKTNCGAHTLVGMHISLIEGVTGTNMVLFCSWFKERADLISTRQICSIL
Length729
PositionTail
OrganismEchinostoma caproni
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Plagiorchiida> Echinostomata> Echinostomatoidea> Echinostomatidae> Echinostoma.
Aromaticity0.09
Grand average of hydropathy-0.208
Instability index40.08
Isoelectric point6.07
Molecular weight81070.44
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08260
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.02|      80|     104|     246|     339|       1
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  246-  339 (125.51/113.00)	LEAMLYDWYNAHVtCadsEFVSTLL......NPIILSTHKFGL...YGHPAAWR.........PWnLEENVSIQAAGLYAAAveimssyttPKEFVAAMTDFLLPGSVGPDT
  349-  446 (128.51/82.05)	LTALLPNAYRMAI.C...QFATSLLvedvmtNPIGSPDWSNQLdecYNSASQWHrssrirrhaRW.LDPDENESHTDLCPSP.........PAVAVNFFKDFLPPQQSSADT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.31|      21|     114|      18|      46|       2
---------------------------------------------------------------------------
   18-   46 (40.40/42.31)	FHPDPVSS......RHWttclfrlhELIP........DQWMTW
  127-  161 (31.92/17.42)	FHRRPVNTsfvllrEHW........HFVPpdadgsnaDNQLTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08260 with Med23 domain of Kingdom Metazoa
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