<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08193

Description Mediator of RNA polymerase II transcription subunit 30
SequenceMLPHGQKALSKHVCRIRSVNQAEGIIGRIGVRYGFFCRTNMSGQFPGGYQSPSGHRGNYNSPIIQQHLNQMNVPNQMGMMGFNQSNVMNNPQMQGVPGQGNQDMGLNPGMMQQNQQQQQQQHQQIAQGMQPNPQQLPSNQHQPGQNQMVGQNPSHQSSQPSSGMGMQQPGGNVGPGNVMNNPQSQNQSVPPNQPGGGTTVQQQQKAEFNLLSLCRIGQETVQDIVSRFQEVFGILRSIQPPNGTNQGQLSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDNCQQGMEYTHVESLIPLKGEIERTEPVHTEEYKKALQENRELVAMVQLKNKQLREIIDKIRLTIWEINTMLSMRRC
Length357
PositionHead
OrganismAnopheles minimus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.04
Grand average of hydropathy-0.861
Instability index51.08
Isoelectric point9.55
Molecular weight40189.09
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08193
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.87|      22|      22|     150|     171|       1
---------------------------------------------------------------------------
   57-   78 (31.48/ 7.21)	GNYNSPIIQQHLNQMNVPNQMG
  115-  133 (31.64/ 7.28)	QQQQQQQHQQIAQGM...QPNP
  150-  171 (44.74/12.98)	GQNPSHQSSQPSSGMGMQQPGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.30|      12|      44|      91|     102|       2
---------------------------------------------------------------------------
   91-  102 (25.98/10.23)	PQMQGVPGQGNQ
  182-  193 (23.32/ 8.38)	PQSQNQSVPPNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08193 with Med30 domain of Kingdom Metazoa
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