<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08107

Description Mediator of RNA polymerase II transcription subunit 31
SequenceMVGKAQRGYFKDAAFVNYLKYLLYWKEPEYAKYLKFPMCLYFLDLLQYEHFRREIVSAQCCKFIDDQAILLWQHYTRRRTRLTALGTTSLTGLAVGGQPVGGGVQGTLLSNEPAIMPNSGSTNNNGSNNGGTIGNNGANSGSIGGIGSNNNGSSSGSGSNSNNGPNSGNVNVPTSVGSQQQQQQQNGAGITQHNGVGGGGGGGGGGGGGVGGLLGNPMGTIGGGSGITGGGINQKVP
Length237
PositionMiddle
OrganismAnopheles maculatus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles> Anopheles maculatus group.
Aromaticity0.07
Grand average of hydropathy-0.410
Instability index34.09
Isoelectric point9.32
Molecular weight24120.37
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08107
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.62|      17|      19|     194|     210|       1
---------------------------------------------------------------------------
  194-  210 (33.06/ 9.78)	NGVGGGGGGGGGGGGGV
  216-  232 (26.56/ 6.15)	NPMGTIGGGSGITGGGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.71|      24|      24|     118|     141|       2
---------------------------------------------------------------------------
   96-  117 (30.97/ 8.10)	..G..GQPVGGGVQG.TLLSNEPAIMP
  118-  141 (44.83/15.09)	NSG..STNNNGSNNG.GTIGNNGANSG
  142-  168 (33.91/ 9.59)	SIGgiGSNNNGSSSGsGSNSNNGPNSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.44|      13|      21|      39|      51|       3
---------------------------------------------------------------------------
   39-   51 (25.15/19.08)	CLYFLD...LLQYEHF
   60-   75 (22.28/16.24)	CCKFIDdqaILLWQHY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08107 with Med31 domain of Kingdom Metazoa
Unable to open file!