<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08039

Description Uncharacterized protein
SequenceLTGPDILQKHSINSLLLEHNEIISRGLPSPIEDSSNALASECRHSSEQQQHQSSASGGHNSGGDGSPSSRGSFGAFDEFRFDTDLMLGGVGIGTPNGLTTETLKLRRRNISFDCTSPATGTSSPGEGTTPSLTLLCPTNGGRNYRNGSSLTQLQQSTIAHQQTQQQSATVQYDLLSGDGTAPTNGERNAVGTGICLSTGTGGSSMGGFDANGVAATNNNALSLFGTGNGSISRSHSPPEHTDTSNLLTSLESTSILDMLNYLTLSQSTNSMTGHHNQSTQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHQNQFAPYSSTLGSLYQHYQQQTTGSDRTFGSAGSTNNNNNGSTTAGLSGLNLAAHYDATCTWSGTLPPRSNRLVTYSSKIFLGGMPWDISEQSLVQIFKPFGSIKVEWPGKEQQATQPKGYVYIIFESDKQVKALLQACTYSTPHNSGAGGGIHGNHGGGGGSTGTNNYGGCSRTNMNGASSMGSLNRFASNCDDSQGQLQLMPMSNLNKPIAPPGAKINFKISSKRIKSKDVEVIPWNIADSNYVKSTSQKLDPTKTVFVGALHGQLTAEGLAKIMNDLFDGVVYVGIDTDKYKYPLGSARVTFNNSRSYMKAVVAAFIEIRTSKFTKKLQVDPYLEDSLCSMCTVQHGPYFCREIMCFRYFCRSCWQLQHSREAYLQKHMPLTRNSKFTAIIGVGPQQQQQHSHASNNHHQQQQSSHDHNSYYNNHHHNHHHHHYGGNGGHQLNGSMSSHSQYHHNGQHHGSSNSAGHHHHHQQQSSRLEMLQQQQHRTPLSKSPSPSMGIGTNADGNSTASSNGSHGSTSSSNSCSPISTGNSASTGGVTSSASSSTSSSLNSNTNGNTAGNASNNSGGGEQLSSSCIGSLNMQQLSFASGGAGVSSNGSGGLII
Length951
PositionTail
OrganismAnopheles farauti
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.06
Grand average of hydropathy-0.826
Instability index58.80
Isoelectric point8.12
Molecular weight102356.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
mRNA 3'-UTR binding	GO:0003730	IEA:InterPro
translation regulator activity	GO:0045182	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP08039
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     125.40|      15|      15|     286|     300|       1
---------------------------------------------------------------------------
  299-  314 (29.34/ 7.31)	QQqQQQQQQQQQQQQQ
  315-  329 (33.74/ 9.37)	QQ.QQQQQQQQQQQQQ
  330-  344 (35.20/10.06)	QQ.QQQQQQQQQQHHQ
  742-  756 (27.13/ 6.27)	QQ.QQQHSHASNNHHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.53|      30|      30|     832|     861|       2
---------------------------------------------------------------------------
  801-  828 (37.03/ 9.45)	NGQH......HGSSN.SAGHH..HHHQQ.QSSrleMLQ
  829-  858 (49.56/15.32)	QQQH.RTPLSKSPSP.SMGIG..TNADG.NST...ASS
  859-  891 (33.18/ 7.64)	NGSHgSTSSSNSCSPiSTGNS..ASTGGvTSS...ASS
  912-  943 (34.76/ 8.38)	NSGG.GEQLSSSCIG.SLNMQqlSFASG.GAG...VSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.79|      15|      16|     494|     508|       3
---------------------------------------------------------------------------
   57-   74 (22.11/ 6.41)	GG.HNSGGDGSpssrGSFG
  494-  508 (29.88/11.35)	GGIHGNHGGGG....GSTG
  513-  527 (27.79/10.02)	GGCSRTNMNGA....SSMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.22|      15|      18|     413|     430|       6
---------------------------------------------------------------------------
  413-  430 (23.43/19.68)	SNRLVTyssKIF..LGGM..PW
  433-  451 (17.79/ 7.07)	SEQSLV...QIFkpFGSIkvEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.50|      14|      15|     362|     376|       7
---------------------------------------------------------------------------
  362-  376 (20.72/13.54)	QQQTTGSdRTFGSAG
  379-  392 (24.79/11.66)	NNNNNGS.TTAGLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.64|      11|      15|     675|     685|       8
---------------------------------------------------------------------------
  675-  685 (21.23/12.04)	QVDPYL.EDSLC
  691-  702 (19.41/10.43)	QHGPYFcREIMC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.75|      17|      25|     174|     190|       9
---------------------------------------------------------------------------
  174-  190 (31.49/16.49)	LLSGDGTAPTNG.ERNAV
  196-  213 (25.26/11.58)	LSTGTGGSSMGGfDANGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.85|      12|      15|     562|     573|      13
---------------------------------------------------------------------------
  562-  573 (20.22/15.20)	INFKIS.SKRIKS
  579-  591 (18.63/13.36)	IPWNIAdSNYVKS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08039 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISRGLPSPIEDSSNALASECRHSSEQQQHQSSASGGHNSGGDGSPSSRGSFGA
2) KFTAIIGVGPQQQQQHSHASNNHHQQQQSSHDHNSYYNNHHHNHHHHHYGGNGGHQLNGSMSSHSQYHHNGQHHGSSNSAGHHHHHQQQSSRLEMLQQQQHRTPLSKSPSPSMGIGTNADGNSTASSNGSHGSTSSSNSCSPISTGNSASTGGVTSSASSSTSSSLNSNTNGNTAGNASNNSGGGEQLSSSC
3) LYQHYQQQTTGSDRTFGSAGSTNNNNNGSTTAGLSGL
4) MLNYLTLSQSTNSMTGHHNQSTQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHQNQFAPYSST
5) NISFDCTSPATGTSSPGEGTTPSLTLLCPTNGG
6) NYRNGSSLTQLQQSTIAHQQTQQQSATVQYDLLSGDGTAPTNGERNAVGTGICLST
7) TGGSSMGGFDANGVAATNNNALSLFGTGNGSISRSHSPPEHTDTSNLLTSLES
23
732
357
258
109
143
200
75
923
393
353
141
198
252










Molecular Recognition Features






MoRF SequenceStartStop




NANANA