<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08017

Description Uncharacterized protein
SequenceMIMDNSKTTSKTTLLKLMLLRAWKERWTDCQWGINVKTILTRGVSGDVYNLADAIIQQAVVGSGANMLFLSYLKHSLCAHLISHAAVLNRIAKYDQFDKQHCLIALLDFLKSIIDGVTCRGKQEEAILTKATVSLVHWLLQIYECVLKSYAEARALQTEEEEVVQRVAAVLERIVENPFLLGVLSIGKCDDPELFIALQKRFNGINNLTLTTGYVAHVGSNQKNVTVTDYMRKLVLLEVDILEMKLFDGGKVEPITYSLQPLLAIEVLLNPMCDTHQYVAQLINLKRLKGYSYARLYCEIMRGCLISLNNVEGTAKESLLCAFAFIKVPHILHQIHTKTNGKEQQDEATGTSYSVEVLEAFELLLQDAPVLDYMDMKCACNVLECLLKEMVKHKLLTETHVKHFVALREPVTLALQKLDSNNAPLTLMLKFVFRVESPLVGILKALSTDCSKVQDALLAMLCQVLTGNSLDLVLSVASVEGKFKAFISGLLKCNDYAKQATSVEIGKASATRGALFDVTFMILASIAQSYGSDVILAEGGNSFFEKWVRDYMVERKKTKSPTTMVKQADPMVLEELIMTLNNSEAGGGLSTSNLRWEDICYTIPALLQQVLMAWENETIAPLEIKKMLDRLKAHFSSFAVCAASWLCAYMQMVRQDEQLKPMNMVQQLCSALTGQQAEEWQQQDYCKERFGLMSQIIRRMQQEFMRTPQINPKLRALFPSQHMVSHLPLEEQFEEAWKAIAERGWLPIETTFLLDTLLQSCGPSWLVEKLVGKLFMCKYIRDLNKMMDIIFAIMHLDIERCTIALLSQLVPMMLLNKTQTPEIIDPQSRVLAKLCVYCIIVTMEASFTTSKKRTRGTAGSELEDLDSLCSSAKLRKIELDGMGVGCEATGAGTEFTLDGAIEPSAPASWEAGSVPTLKEPLQSCLQTLFRTFTQYITTDELSPKVYFVFQFLSLLVESGRERIMCVLKLIPNGLVQNLLKINATDEMTVGLLLSMTFDETTHIWRGSPMAPLYNPAQGLGELLHRLLQRTPTRIAQISVDTGRSITYHQLHLWSIRFAQSLTGFGGLGRGDLVTVVARNGEQLAAVVFGCFMAAIPLNTLDPTFRSEDYEHMLRTVVPKAVICDSELLPVLKKALDAVGITPQLIVIGKRINGYPTVDDFLLPNGLEEGFVPQHVEDPAHELAIVLCSSGTTGLSKGVCLSHAICIAHTANLWRATDCERVLCFSSLYWVSGLGVLLNATTVGATRIITRESFSARLLIDLVEQFRITTLFMPPAQALTLLGDATIGMADFSSLQLVLCGGGIVSGELKASFEKYLPKRAKFIVGYGLSEIGGGCFTTVLSYKAGAIGTPNAGMEAKVVDGEGTALQPGEEGELLVRAAYAFLEYYGNPVETEKMLDEDGWLHTGDIARYDEDGVFFVVDRKKDIIKYAGYQISPTELESTIMQLFAGSLLMVCVTGIPVPGNDLPVVLAVRQHEGTTVQGQDIVDGLAEVVADFKRLRGGVFFVDSLPMTPSGKIVRRRCKEMAIALLYDLNTPTGRQFAMSDICLLRNIQMRKESIKL
Length1560
PositionTail
OrganismAnopheles epiroticus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.07
Grand average of hydropathy0.138
Instability index37.13
Isoelectric point5.85
Molecular weight173084.98
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08017
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     367.92|      94|     157|     730|     823|       1
---------------------------------------------------------------------------
  504-  624 (100.12/60.02)	.....EIGKASATRGAL.FDVTFM.......iLASIAQSYGSDVILAE.GGNSFFEKWVRDymverkktkspttmvkqadpmvleelimtLNNSeAGGGLSTSNLRWEDiCyTIPALLQQVLMAWENETIAPlEI
  632-  709 (103.58/62.36)	KAHFSSF..AVCAASWLCAYMQMVrqdeqlkpMNMVQQLCSA..LTGQQAEEWQQQDYCKE...................................................RFGLMSQIIRRMQQEFMRTP.Q.
  730-  823 (164.22/103.46)	EEQFEEAWKAIAERGWLPIETTFL........LDTLLQSCGPSWLVEKLVGKLFMCKYIRD.............................LNKM.MDIIFAIMHLDIER.C.TIALLSQLVPMMLLNKTQTP.EI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     217.23|      58|     157|     253|     323|       2
---------------------------------------------------------------------------
  253-  323 (88.80/84.38)	EPITYSLQPL..............LAIEVLLNPMCDThqyvaqlinlKRLKGYS..........YARLYCEIMRG....CLISLNNVEGTAKESllcAF
  349-  399 (73.49/44.74)	TGTSYSVEVL..............EAFELLLQD..............APVLDYM..........DMKCACNVLE.....CLLKEMVKHKLLTET.....
  409-  486 (54.94/32.06)	EPVTLALQKLdsnnapltlmlkfvFRVE...SPLVGI............LKALStdcskvqdalLAML.CQVLTGnsldLVLSVASVEGKFK.....AF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.21|      33|      34|     101|     133|       3
---------------------------------------------------------------------------
  101-  133 (54.32/37.35)	HCLIALLD.FLKSIIDGVTCRGKQEEAILTKATV
  137-  170 (48.88/32.85)	HWLLQIYEcVLKSYAEARALQTEEEEVVQRVAAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      13|      35|    1357|    1370|       4
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 1357- 1370 (18.60/13.91)	KVVDGEGtALQPGE
 1394- 1406 (25.81/14.88)	KMLDEDG.WLHTGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.91|      28|      36|    1193|    1222|       8
---------------------------------------------------------------------------
  990- 1007 (22.16/12.15)	....GLLLS..MTFDETTHIWRGS......
 1193- 1222 (46.70/45.99)	GLskGVCLSHAICIAHTANLWRATDCERVL
 1232- 1258 (44.05/35.16)	GL..GVLL.NATTVGATRIITRESFSARLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08017 with Med24 domain of Kingdom Metazoa
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