<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08006

Description Mediator of RNA polymerase II transcription subunit 29
SequenceMMNQMGMMMQQQGVGVPGGPGGVGGVGMPGPGGVGVSPGMMQSPQMQQAQQQQVQQQQVQQQQQQVQQQQVQQQQAQQQQQQHSQTAQQQAQQTEKVDNISKVKVLVGPLRDALSTTIKAAAQSIQQNTLADAGSKTVDLNNAPRFDKHLEEFYSICDQIELNLKTAKLCMQQCTSSQQYLPIPVATSQPPLPETNALTYNQYLEVVKLQISYAKDIHDTLICAAQNISPSE
Length232
PositionTail
OrganismAnopheles dirus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.03
Grand average of hydropathy-0.609
Instability index65.34
Isoelectric point5.56
Molecular weight25343.30
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08006
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.09|      15|      15|      50|      64|       1
---------------------------------------------------------------------------
   50-   64 (30.73/ 7.88)	QQQQVQQQQVQQQQQ
   67-   81 (31.36/ 8.19)	QQQQVQQQQAQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.02|      14|      17|      13|      28|       2
---------------------------------------------------------------------------
   13-   28 (23.42/20.21)	GVGVpgGPGGVGGVGM
   33-   46 (28.60/16.50)	GVGV..SPGMMQSPQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08006 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MMNQMGMMMQQQGVGVPGGPGGVGGVGMPGPGGVGVSPGMMQSPQMQQAQQQQVQQQQV
2) QVQQQQVQQQQAQQQQQQHSQTAQQQAQQT
1
65
59
94










Molecular Recognition Features






MoRF SequenceStartStop




NANANA