<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08000

Description Uncharacterized protein
SequenceMIMDNSKTTSKTTLLKLMLLRAWKERWTDCQWGINVKTILTRGVSGDVYNLADAIIQQAVVGSGANMLFLSYLKHSLCAHLISHAAVLNRISKYEQFDKHHCLIALLDFLKSIIDGVTCRGKQEESILTKATVSLVHWLLQIYECILQTYAETRALQPEEEDVVQRVASVLERIVENPFLLGVLSIGKTEDPELFVTLQKRFNGISNLTLTTGYVAQVGAAGGAKNVTVTDYMRKLVLLEVDLLEMKLFDGGNVEPVTYSLQPLIAIEVLLNPMCDTNQYVAQLIGLKRLKGYSYARLYCELMRACLVSLNNVEGTAKESLLCAFAFIKVPHIVHQIHTKTNGNEQKDETSGTNYSTEVVEAFEMLLQDTPVLDYMDMKCSCNVVECLLKEMAKHNLLTETHVSHFGALREPVTLGLQKLEANNAQLTLMLKFVFRVESPLVGILKALSTDHSKVQDALLAMLCQVLTGNSLDLVLSVASVEGKFKAFVSGLLKCNEYAKQSPGVVELGKAGTTRGALFDVTFMILACIAQSYGSDVILAEGGNSFFEKWVRDFMVERKKTKSPMTMVKQADPMVLEELIMALNNSNGAGDGTGGLKASTLRWEDICYTIPALLHQVLMAWENETLSPVEIKKMLDGLKAHFCSFAVCASSWLCAYVQMVRQDEQLKPMNMVQQLCAALTGPQADEWQQQDYCKERFGLMGQIIRRMQQELQRMPQINPKLRALFPNSQQQNIVSHLPLEEQFEEAWKGVAERGWLSVETAFLLDTLLQSCGPVWLVEKLIAKLFLCKYIRELNKTMDIIFAIMHLDMERCTIALLSQLVPMMLLNKQQTPEIVDPQSRVLAKLCVYCIIVTMEASASAAGSKKRTRGTTGQPDVEDMDALCTSAKLRKIELEGIGVGCEGSTGAELTLDSALETAAGWDSAASPPTVASLKEPLQGCLQTLFRTFTQYITTDELSPKVYFIFQFLSLLVESGRERIMCVLKLIPNGLVQNLLKINATDEMTVGLILSHTVDNMPLALFDETSKTWHGPPTTPLYNPAQGLGELLHRILQRTPTRTAQISADTTRSVTYQQLHLWSVRFAQSLTGACGLARGDLVTVVARNGEQLAAVVFGCFMAAIPLNTLDPTFRSEDYEHMLRTVPPKALICDSELVPVLKEACESAGIASIQLIVLGKRINGYATVDDFLLPNGLETSYTPQHIEDPAQELAIVLCSSGTTGLSKGVCLSHAICIAHTANLWKATDCDRVLCFSSLYWVSGLGVLLSASLAGATRIITRESFNPRLLIDLVEQFRITTIFFPPAQALALLGDATIGMADFSSLRHVLCGGGVVSGELKASFEKYIPRKAKFLVGYGLSEIGGGCFSTILGYKPGAIGTASACIDAKVVDDSGAPLEAGAEGELLVNARFVFLGYYGNEAETADMKDAAGWLHTGDIARYDEDGVFFVVDRRKDILKYGGFQISPTELEEKIMQLFGGVLMMVCVTGIPVPGNDLPVALAVRQPDGAAVLEQEIVDGLAEVVADFKRLRGGVFFVDSLPMTPSGKILRRSCKEMAKTLYEEKLSGTSLYDLNTTSGRQFAMSDICLLRNIQMRKESIKL
Length1592
PositionTail
OrganismAnopheles dirus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.07
Grand average of hydropathy0.119
Instability index35.78
Isoelectric point5.65
Molecular weight175243.69
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08000
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     270.09|      88|     101|     638|     738|       1
---------------------------------------------------------------------------
  638-  738 (137.96/129.22)	LKAHFCSF..AVCASSWLCAYVQMVrQDEQLK...PMNMVQQLCAALTgpqadewqQQDYCKERFGLMGQIIRRMQQELQR.....MPQINPKLraLFPNSQQQNIVShlP
  739-  836 (132.13/89.45)	LEEQFEEAwkGVAERGWLSVETAFL.LDTLLQscgPVWLVEKLIAKLF........LCKYIRELNKTMDIIFAIMHLDMERctialLSQLVPMM..LLNKQQTPEIVD..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.20|      45|     106|     908|     956|       2
---------------------------------------------------------------------------
  908-  956 (72.56/57.27)	TLDS...AL..ETAAGWDsaaSPPTvASLKEPLQGCLQTLFRTFTQYIT.TDELS
 1010- 1060 (69.64/43.47)	TVDNmplALfdETSKTWH...GPPT.TPLYNPAQGLGELLHRILQRTPTrTAQIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     467.39|     149|     217|      65|     257|       3
---------------------------------------------------------------------------
   65-  218 (232.38/242.11)	ANMLFLSYLKHSLCAHLISH..AAVLNRISKYEQFDKHHCLIAlLDFLK..SIIDGVTCRGKQEESILTKATVSLVHWLLQIYECILQtyaETRALQPEEEDVVQRVASVLERIVENPFLLG...VLSIGKTEDPeLFVTLQKRFNGISNLTLTTGYVAQV
  282-  437 (235.01/156.93)	AQLIGLKRLKGYSYARLYCElmRACLVSLNNVEGTAKESLLCA.FAFIKvpHIVHQIHTKTNGNEQKDETSGTNYSTEVVEAFEMLLQ...DTPVLDYMDMKCSCNVVECLLKEMAKHNLLTethVSHFGALREP.VTLGLQKLEANNAQLTLMLKFVFRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.83|      42|     100|    1159|    1206|       4
---------------------------------------------------------------------------
 1159- 1206 (60.45/63.08)	SAGIASIQLIVLGKRINGYATVdDFLLPNGLETSYTPqhiedPAQELA
 1261- 1302 (70.38/52.60)	SASLAGATRIITRESFNPRLLI.DLVEQFRITTIFFP.....PAQALA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08000 with Med24 domain of Kingdom Metazoa
Unable to open file!