<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07993

Description Mediator of RNA polymerase II transcription subunit 28
SequenceMASSSNGSGNLVDELEEAFQSCIHALTKEESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENFDLKQEIGRKDELIRKHYEKIESWKQLLSDQQNFNKPIQSMPPDMRGNLAGGAPGAPAGLMGSGGMNMPMQMQNQHQQQQQMQQLQVQQQQMQQQMAQSMPMGGANPQLFQQGGMPRGVGQPGSGPGFPQGAGPNLQGPLAYLEKTASNIEGDAGGAGDAVEVVAAEEVVDVAV
Length256
PositionHead
OrganismAnopheles dirus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.05
Grand average of hydropathy-0.547
Instability index53.79
Isoelectric point4.71
Molecular weight27783.08
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07993
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.76|      14|      16|     189|     204|       1
---------------------------------------------------------------------------
  189-  204 (21.60/15.60)	PQlFQQGGMPRGVGqP
  208-  221 (30.16/13.25)	PG.FPQGAGPNLQG.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.07|      23|      56|     107|     129|       2
---------------------------------------------------------------------------
  107-  129 (41.95/16.98)	KQLLSDQQNFNKPI...QSMPPDMRG
  139-  160 (31.00/11.02)	PAGLMGSGGMNMPM...QMQNQHQQ.
  166-  186 (22.12/ 6.18)	.QLQVQQQQMQQ..qmaQSMP..MGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07993 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQNFNKPIQSMPPDMRGNLAGGAPGAPAGLMGSGGMNMPMQMQNQHQQQQQMQQLQVQQQQMQQQMAQSMPMGGANPQLFQQGGMPRGVGQPGSGPGFPQGAGPNLQGPLAYLEKTASNIEGDAGGAGDAVE
113
244










Molecular Recognition Features






MoRF SequenceStartStop




NANANA