<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07927

Description Uncharacterized protein
SequenceMMKRTEDDRTRPGSSYQFLDLTDAGQNEASALMGILYPTSSALSDTPPSSSLPSCTGRQYSAPEQTLPSMHSSTKEKELDDAIGMERQQLHPKDSLHEGRAIPQGLTAPLNGLNPNARAFDPVPVVFLPRPTAVIGVGGGGSKARSPGKELAEQQEATSVLAGHSAGVPLPPLTHGVGMMIVPVRKHSLVSMPNQPHQHPQQQQQQQQPPPLLHTAGGNVGFLARPSLVPGGPAGGGGLLRPASIVPTPATSAPPLPTFVNEGISSSVVVDTEQVLASGEQWIGFAVQPTATSVAGGGGGGGGGGGCAEGIARSSVATAVTMPPHTNNPHHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLGSTANNQQQQTAG
Length378
PositionTail
OrganismAnopheles christyi
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.03
Grand average of hydropathy-0.617
Instability index72.55
Isoelectric point6.29
Molecular weight39547.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
thiol-dependent deubiquitinase	GO:0004843	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07927
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.05|      15|      15|     333|     347|       1
---------------------------------------------------------------------------
  333-  347 (33.28/11.71)	QQQQQQQQQQQQQQQ
  360-  374 (26.78/ 8.04)	QQQQQLGSTANNQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     293.26|      71|     151|     127|     206|       2
---------------------------------------------------------------------------
  127-  206 (118.64/61.76)	FLPRPTA..VIG..VGGGGSKARSPGkeLAEQQEATSVLAGHSAGVPLPPLTH.GVGmmivpvRkHSLVSMPN.................QPHQHPQQQQQQ
  222-  281 (82.91/30.97)	FLARPSL..VPGgpAGGGG..LLRP.........ASIVPTPATSAPPLPTFVNeGIS........SSVVVDTE.................QVLASGEQ....
  285-  359 (91.70/34.96)	FAVQPTAtsVAG..GGGGGGG..GGG..CAEGIARSSV.A...TAVTMPPHTN..........N.......PHhlqqqqqqqqqqqqqqqQQQQQQQQQQQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07927 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASALMGILYPTSSALSDTPPSSSLPSCTGRQYSAPEQTLPSMHSSTKEKELDDAIGMERQQLHPKDSLHEGRAIPQGLTAPLNGLNP
2) AVQPTATSVAGGGGGGGGGGGCAEGIARSSVATAVTMPPHTNNPHHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLGSTANNQQQQTAG
3) GGPAGGGGLLRPASIVPTPATSAPPLPTFVNEGI
4) VIGVGGGGSKARSPGKELAEQQEATSVLAGHSAGVP
5) VRKHSLVSMPNQPHQHPQQQQQQQQPPPLLHTAGGNV
29
286
231
134
184
115
378
264
169
220










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQQQQQQQQQQQQQQQLGSTANN
2) YQFLDLT
348
16
371
22