<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07897

Description Uncharacterized protein
SequenceMDINPFGNNNTSGGGGSSSSGGQHGPSGPQLVEKELTVGKTMQLQNVCGMNNNIGVGSNNNHYGSGGIGLLKDKYGGGGGGGSSTVKLSSNQSASKSTPSSDGYSFYYNNQPPSLTCSPTENQSMAATLGSSNGGNGGGSSSGGRGGLLLSDDEDISERSKKDPTGPSRWMDRNYCHLSVSHYPSGPKSKGGGVPAGQQQQQQQQQQQPKRGGSTSVYKPVNCYNMVLQSPLEDESDMEDKLKYFNYQHEMQTYNSTRKDKHGFSSSSGGDMHYAHKGIGGSEGEDILVLGSMAASEHEKALLGGKQQQKDGDSDEALPKMNLLHLSQKLELVPHVGLSVASPSTENELMLNAEFSDKQMTQFGEPDLRDNKSSPGSNIMQYDGSPRRFGLNLCDESDCYLASSVKINLTSPSLLTLPRPGFPQRVVPAATSASTTSAVAGPNKASMTPSANLSCSPSLLDQVNSSLNKTMLFEASKNGRASDGEGNLFAGGDVSKANSARKEQEQHGYDSLQSCDQGKPSPSETGMMSHADKVQLNAQAAAAAAAAAADDELTMHGGTSSFPPITNSSTFDYLYEFSETRKVLEEFFKCPSTEDVEKFSDYNDSGDEDDAESLDVQYDYPVELERSKAIETTYIGNMNGAGKRDRARSPKSPSMLTGDGLALEQQQEQEEEEDDDDEDDHTADVEDEEEDDGKGNGLTKYNFKLKAGKTRPIAEIGAGGMLRKKKSTDLHLLKGHSNVGKNFNYSPDTTDYDSNCGDYDSEISPQYGSDFGLITGSGATMCEDLNNGVISAASGAGPAPGESLNCLFTSSAGNYSRYYAAMPVLEDGLSSGHVSDSDTNNQHNANGTVTVLPPDLVTGSIKQLVSGGTGGTGSAYDTIQSTPPPPAPAPHRKSSIDCDNIPGLQQQQQQQQQQQQQQQQQQLNHLQQLQQPSHQQQQQQQQQQQTQQQQQPQQSQLHPQQFNHLQTSSADVQSTLKDIRICLQKTKSINLVAGGAQTRKAFDKNSLCSGEFSTDPLGGGAGGTGVASASGAGGGVGMPGGPSLSPIWIPRTRVAADVQDYAGKQVTPGGAGTGSSTLGNGLPPLPGPAKLSSSPSSLLSSALPVAGGGKPGGSGSAYPEESEALIGGHGHGQPAKSPGVPLADEDEDPDTDLETDRLLGHQRLDDQGFYDESSGGKQWSSERKTGPRLLLGKLSPKQAQGMASTAVALQNGGKPANQQQAAGQGPSERTLGVGGGRGSAAPNSSVSSFLQAAASGGTASGGSAQGPVGSSAGVGVGASSVTLPELSGSTSATGTPIAPSSAAGGGAGSGGATVGHKAAKASAAGNLINFNGPNDPQTQLTSPNPSPQHSLGEGNLLDKSNDSGSPGGSTKSKSLHNNETKRKSKNKEVLIEGVLFRARYLGSTQLVCEGQPTKSTRMLQAEEAVSRIKSPDGEVQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQDVDSTDSSGGGGGGAGGGGNGTTTHSGSHAGGGSTPSQKLAGGGGAGSGGAGPKGNRTPKMICHVFESEEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFMKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLASSGAAARCGQLNIGDQIIAINGLSLVGLPLSTCQGYIKNTKNQTVVKFTVVPCAPVVEVKIKRPNTKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGEILMKTMPTSMFRLLTGQENPIYI
Length1802
PositionTail
OrganismAnopheles atroparvus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.05
Grand average of hydropathy-0.589
Instability index54.25
Isoelectric point5.27
Molecular weight188128.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07897
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.45|      21|      29|     902|     930|       1
---------------------------------------------------------------------------
  902-  922 (46.00/22.23)	PGLQQQQQQQQQQQQQQQQQQ
  932-  952 (46.45/19.38)	PSHQQQQQQQQQQQTQQQQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     314.22|      55|      56|    1018|    1072|       2
---------------------------------------------------------------------------
 1018- 1050 (51.90/14.92)	......................GG.GAGGTG......VASAS.GA..............GGGV.GM..PG......GPS...LSPIWIP
 1051- 1104 (55.03/16.32)	RTRVAADVQDYAGKQVTPGGA.......GTG........S.S.TL..............GNGLpPL..PGpaklssSPS.slLSS.ALP
 1204- 1242 (45.91/12.25)	STAVALQNGGKPANQ........Q.QAAGQG......PSERTlGV..............GGGR.GS..AA..................P
 1243- 1288 (60.20/18.63)	NSSVSSFLQAAASGGTASG....G.SAQG.P......VGSSA.GV..............GVGA.SS..VT......LPE...LS....G
 1289- 1347 (54.04/15.88)	ST..SAT.....GTPIAPSSAAGG.GAGSGGatvghkAAKAS.AA..............GNLI.NFngPN......DPQtqlTSPNPSP
 1485- 1543 (47.13/12.79)	RRFVPQDVDSTDS....SGGGGGGaGGGGNG......TTTHS.GShagggstpsqklagGGGA.GS..GG.....aGP...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.31|      33|      64|     589|     625|       4
---------------------------------------------------------------------------
  589-  625 (50.45/32.06)	KCPS..TED...VEKFSDYNDSGDEDDAEslDVQYDypVELE
  651-  688 (48.86/21.14)	KSPSmlTGDglaLEQQQEQEEEEDDDDED..DHTAD..VEDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.84|      30|      46|     138|     168|       5
---------------------------------------------------------------------------
  138-  167 (53.91/20.15)	GGSSSGGRGGLLLSDDEDISERSKKDPTGP
  186-  213 (46.13/13.15)	GPKSKG..GGVPAGQQQQQQQQQQQPKRGG
  866-  888 (35.79/12.09)	....SGGTGG.TGSAYDTI.Q.STPPPPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.07|      55|     241|     214|     271|       6
---------------------------------------------------------------------------
  214-  271 (90.33/69.56)	STSVYKPVNC...YNMVLQSPLEDE.SDMEDKLkyFNyQHEMQTYNSTRK..DKHGFSSSSGGD
  456-  516 (80.74/50.69)	SPSLLDQVNSslnKTMLFEASKNGRaSDGEGNL..FA.GGDVSKANSARKeqEQHGYDSLQSCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.19|      12|      15|     737|     748|       7
---------------------------------------------------------------------------
  737-  748 (23.19/14.95)	SNVGK.NFNYSPD
  754-  766 (19.00/10.62)	SNCGDyDSEISPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.87|      16|      56|     772|     787|       8
---------------------------------------------------------------------------
  772-  787 (30.41/14.91)	GLI...TGSGATMCEDLNN
  788-  806 (22.43/ 8.79)	GVIsaaSGAGPAPGESLNC
  828-  841 (24.03/10.02)	GL.....SSGHVSDSDTNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.49|      29|      29|    1133|    1161|       9
---------------------------------------------------------------------------
 1110- 1139 (35.67/18.86)	KPGGSGSAYPE...ESEA......LIGghgHgQPAKSPG
 1140- 1168 (49.53/29.74)	VPLADEDEDPDTDLETDR......LLG...H.QRLDDQG
 1169- 1201 (29.28/13.84)	..FYDE.SSGGKQWSSERktgprlLLG...KlSPKQAQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.87|      15|     703|      98|     112|      11
---------------------------------------------------------------------------
   98-  112 (31.44/19.06)	TPSSDGYSFYYNNQP
  809-  823 (29.43/17.32)	TSSAGNYSRYYAAMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07897 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIETTYIGNMNGAGKRDRARSPKSPSMLTGDGLALEQQQEQEEEEDDDDEDDHTADVEDEEEDDGKGNGLTKY
2) DMEDKLKYFNYQHEMQTYNSTRKDKHGFSSSSGGDMHYAHKGIGG
3) EDGLSSGHVSDSDTNNQHNANGTVTVLPPDLVTGSIKQLVSGGTGGTGSAYDTIQSTPPPPAPAPHRKSSIDCDNIPGLQQQQQQQQQQQQQQQQQQLNHLQQLQQPSHQQQQQQQQQQQTQQQQQPQQSQLHPQQFNHLQTSSA
4) FDKNSLCSGEFSTDPLGGGAGGTGVASASGAGGGVGMPGGPSLSPIWIPRT
5) LPRPGFPQRVVPAATSASTTSAVAGPNKASMTPSANLSCSPSL
6) MDINPFGNNNTSGGGGSSSSGGQHGPSGPQLVEKELTVGK
7) NELMLNAEFSDKQMTQFGEPDLRDNKSSPGSNIMQY
8) QDVDSTDSSGGGGGGAGGGGNGTTTHSGSHAGGGSTPSQKLAGGGGAGSGGAGPK
9) QPTKSTRMLQAEEAVSRIKSPDGEVQPSTEV
10) SDGEGNLFAGGDVSKANSARKEQEQHGYDSLQSCDQGKPSPSETGMMSHADKVQ
11) SGGIGLLKDKYGGGGGGGSSTVKLSSNQSASKSTPSSDGYSFYYNNQPPSLTCSPTENQSMAATLGSSNGGNGGGSSSGGRGGLLLSDDEDISERSKKDPTGPSRWMDRNYCHLSVSHYPSGPKSKGGGVPAGQQQQQQQQQQQPKRGGSTSVYKP
12) VQDYAGKQVTPGGAGTGSSTLGNGLPPLPGPAKLSSSPSSLLSSALPVAGGGKPGGSGSAYPEESEALIGGHGHGQPAKSPGVPLADEDEDPDTDLETDRLLGHQRLDDQGFYDESSGGKQWSSERKTGPRLLLGKLSPKQAQGMASTAVALQNGGKPANQQQAAGQGPSERTLGVGGGRGSAAPNSSVSSFLQAAASGGTASGGSAQGPVGSSAGVGVGASSVTLPELSGSTSATGTPIAPSSAAGGGAGSGGATVGHKAAKASAAGNLINFNGPNDPQTQLTSPNPSPQHSLGEGNLLDKSNDSGSPGGSTKSKSLHNNETKRKS
629
237
826
1002
417
1
347
1490
1411
482
65
1058
701
281
970
1052
459
40
382
1544
1441
535
220
1384










Molecular Recognition Features






MoRF SequenceStartStop




1) IGLLKDKY
2) PRLLLGKLSPK
3) TDLETDRLLGHQRLDD
4) YSFYYN
68
1187
1151
104
75
1197
1166
109