<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07892

Description Mediator of RNA polymerase II transcription subunit 28
SequenceMRVHINSHSFSLQCPPSIYYVPNFITEEEETSILQAISKTPKPRWTQLSNRRLINYGGIPHPKGMIAEDMPVWLTQYVMRINQLNIFEQGIEANHVLVNEYLPGQGIMPHLDGPLFYPTIATISCGSHTVLEYDRQIEMGPSDNTSLVRESVTKVLIEPCSLLVVKEDMYHKYFHSIKEQEQDTIDGNIANLRLLSKVLEQSIQIPVAQSLFRLLSAEMASSSNVSGNLVDELEEAFQSCIHALTKEESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENFDLKQEIGRKDELIRKHYEKIETWKQLLSDQQNFNKPIQSMPPEMRANLAGGAPGAPAGLLPGGGMNATMQWEWEMVEGDAGGAGDAVEVVVEEEVVVVAVWPSFTVVH
Length409
PositionHead
OrganismAnopheles atroparvus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.07
Grand average of hydropathy-0.224
Instability index53.22
Isoelectric point4.93
Molecular weight46033.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07892
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.47|      27|      30|      43|      71|       2
---------------------------------------------------------------------------
   45-   71 (52.74/44.09)	W.TQLSNR..RL.INYGGIPHPKGMIAEDMP
   73-  103 (36.73/21.30)	WlTQYVMRinQLnIFEQGIEANHVLVNEYLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.65|      10|      32|     293|     302|       5
---------------------------------------------------------------------------
  293-  302 (16.85/10.61)	DLLLKEENFD
  326-  335 (17.80/11.58)	QLLSDQQNFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07892 with Med28 domain of Kingdom Metazoa
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