<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07882

Description Mediator of RNA polymerase II transcription subunit 29
SequenceMMNQMGMMMQQQGVGVPGGAGVVGMAGPGGIGVAPGMMQSPQMQQAQQQQVQQQQQVQQQQQQQQQQVQQQQQQQQQQQQQQPQQVQQHHQQQQQMQQQTEKVDNISKVKGLVGPLRDALSTTIKSAALVIQHNHMNDAGSKTVDHNNGPRFDKHLEEFYSICDQIELNLKTAKLCMQQCTSSQQYLPIPVATSQQPPPETNALTYNQYLEVVKLQIGYAKDIHDTLICAAQNISPSE
Length238
PositionTail
OrganismAnopheles atroparvus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.03
Grand average of hydropathy-0.824
Instability index69.80
Isoelectric point6.14
Molecular weight26563.57
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07882
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.28|      12|      42|      39|      50|       3
---------------------------------------------------------------------------
   39-   50 (23.54/ 8.06)	QSPQMQQAQQQQ
   82-   93 (24.75/ 8.92)	QPQQVQQHHQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.56|      12|      17|       6|      18|       4
---------------------------------------------------------------------------
    6-   18 (21.26/13.69)	GmMMQQQGVGV.PG
   24-   36 (21.31/ 8.88)	G.MAGPGGIGVaPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07882 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IKSAALVIQHNHMNDAGSKTVDHNNGPRFDKHL
2) MMNQMGMMMQQQGVGVPGGAGVVGMAGPGGIGVAPGMMQSPQMQQAQQQQVQQQQQVQQQQQQQQQQVQQQQQQQQQQQQQQPQQVQQHHQQQQQMQQQTEKVDNISKVKGL
124
1
156
112










Molecular Recognition Features






MoRF SequenceStartStop




NANANA