<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07874

Description Uncharacterized protein
SequenceMFELQKRPYCAGRTSVSKDENQRDEEAGDKGSWENGLSYECRSLLFKALHNVIERCLLSRDVVRIGRWFVQPSSNGDRLFGKSSHHASFSFAFFVHGDSTVCVAMDIREHPPVRPLELKHLEEALAQQASPPSPATSPTMETPSAGVAPPGSPGAGSGPSPGSPTSTPSAPTSPPREILLAPFGLAGTLTGQSYKATDPQTQKVLDDWSAFYPISSKNIGLSDAADSVPPIVEIMVGRVRMRYPSKYVLVTDLDERASDDVGTSTTSNQTTTASAAASVVSALKGVCNPAEVTAKSERPGGGDSINLPSAAGSSSSSNQSGTPAAKGSSSSSTPSGGNPPPAPGSTVRQRNHHKSLMTPPLTVPESPSNDLGNPLSMSSALINKSAAVVLPERVWQDCIMHAAPPTPPATANSSTTGGSQTGTGTTSGTSAAAGGVTIKSEPKDTTGPSNGSGTTGAGGADENSSGAANGAVDANGNSSVWEISDPASKVPCSCIKCRRGPPTSSSSSSSSSSSSFAGRSQQQHQQQQQQQQQQAIVATSSNSAGGGSLYTSVPSPSSTAGGSSSSSVHRHGKSPGSASNASSYSIASSGLAGSNRAEKSSQHHHHPYHGGGNGGQTVKDHHGHNHHYHHSHHSHHHHNHHHRPQRIAFHKRSPQEALFLPGSKPMSLSDAAAAAAAAAAAAAAAATVAKAASTTDVPAAPSPGAVSSGDSVADPLELADSCLRSNQNCSTSGTGGANAGNAAGNTTPYGGPSSYCRNPMSIGDSHPLPSEGSPASAAPSPMQPSSVSQPTSVPSGDQVGKRISNRFME
Length809
PositionMiddle
OrganismAnopheles atroparvus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.04
Grand average of hydropathy-0.559
Instability index59.39
Isoelectric point7.45
Molecular weight82367.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07874
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.56|      32|      34|     306|     339|       1
---------------------------------------------------------------------------
  150-  174 (34.22/ 6.14)	PGS...PG.AGSGPSPGSPTSTPS.APTSP....
  306-  338 (51.48/17.30)	NLPSaAGS.SSSSNQSGTPAAKGSSSSSTPSGGN
  767-  798 (42.86/ 8.11)	PLPS.EGSpASAAPSPMQPSS.VSQPTSVPSGDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.49|      17|      17|     593|     609|       2
---------------------------------------------------------------------------
  540-  556 (22.93/ 6.87)	SSNSAGGGSLYTSVPSP
  593-  609 (31.56/12.89)	GSNRAEKSSQHHHHPYH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.60|      18|      18|     671|     688|       4
---------------------------------------------------------------------------
  671-  688 (25.29/10.21)	AAAAAAAAAAAAAAAATV
  689-  706 (30.30/13.73)	AKAASTTDVPAAPSPGAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.46|      14|      93|     391|     414|       8
---------------------------------------------------------------------------
  394-  414 (17.46/17.59)	VWQdcIMHaapptPPATANSS
  480-  493 (26.00/ 6.09)	VWE..ISD.....PASKVPCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.00|      10|     272|     344|     353|      10
---------------------------------------------------------------------------
  344-  353 (19.06/11.91)	GSTVRQ...RNHH
  615-  627 (14.65/ 7.09)	GQTVKDhhgHNHH
  628-  637 (20.30/13.26)	YHHSHH...SHHH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07874 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAAATVAKAASTTDVPAAPSPGAVSSGDSVADPLELADSCLRSNQNCSTSGTGGANAGNAAGNTTPYGGPSSYCRNPMSIGDSHPLPSEGSPASAAPSPMQPSSVSQPTSVPSGDQVGKRISNRFME
2) CNPAEVTAKSERPGGGDSINLPSAAGSSSSSNQSGTPAAKGSSSSSTPSGGNPPPAPGSTVRQRNHHKSLMTPPLTVPESPSNDLGNPLSMSSALINKSAA
3) PCSCIKCRRGPPTSSSSSSSSSSSSFAGRSQQQHQQQQQQQQQQAIVATSSNSAGGGSLYTSVPSPSSTAGGSSSSSVHRHGKSPGSASNASSYSIASSGLAGSNRAEKSSQHHHHPYHGGGNGGQTVKDHHGHNHHYHHSHHSHHHHNHHHRPQRIAFHKRSPQEALFLPGSKPM
4) RVWQDCIMHAAPPTPPATANSSTTGGSQTGTGTTSGTSAAAGGVTIKSEPKDTTGPSNGSGTTGAGGADENSSGAANGAVDANGNSSVWEI
5) VRPLELKHLEEALAQQASPPSPATSPTMETPSAGVAPPGSPGAGSGPSPGSPTSTPSAPTSPPREILLAP
679
287
491
393
113
809
387
666
483
182










Molecular Recognition Features






MoRF SequenceStartStop




1) RIAFH
646
650