<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07869

Description Mediator of RNA polymerase II transcription subunit 30
SequenceMAGQFPGGYQSPSGHRGNYNSPIIQQHLNQMNVPNQMGMMGFNQNNMMNSPQMQGVPGQGNQDMGLNPGMMQQNQQQQQPGQGMQPNPQQVATNQHQPGANQMVGQNPTHQAAQPSPQMGMQQQQQQQQQQQQQQQQQQQQSSNVGPGNPMNNPQSQNQSVPPNQPGAGTAVQQQQKAEFNLLSLCRIGQETVQDIVSRFQEVFGILRSIQPPNGTNQGQLSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDNCQQGMEYTHVESLIPLKGELERTEPVHTEEYKKALQENRELVAMVQLKNKQLREIIDKIRLTIWEINTMLSMRRC
Length329
PositionHead
OrganismAnopheles arabiensis (Mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.04
Grand average of hydropathy-1.047
Instability index56.91
Isoelectric point9.08
Molecular weight37260.47
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07869
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     247.48|      42|      48|      49|      94|       1
---------------------------------------------------------------------------
    5-   32 (43.96/ 9.60)	FPG..GYQ.SPSGHRGN......yNSPIIQ..................QHLNQMN
   33-   78 (61.21/23.40)	VPNQmGMMGFNQN..NM......mNSPQMQgvpGqGNQDMGLN.PGMMQQNQQQQ
   79-  108 (46.89/10.75)	QPGQ.GMQPNPQQVATN......qHQP......G.ANQMVGQN.P..........
  109-  129 (36.97/ 6.84)	.THQ.AAQPSPQ...........................M.....GMQQQQQQQQ
  130-  176 (58.45/15.31)	QQQQ.QQQQQQQQ.SSNvgpgnpmNNPQSQ......NQSVPPNqPGAGTAVQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.31|      20|      28|     189|     208|       2
---------------------------------------------------------------------------
  189-  208 (33.91/27.57)	GQETVQDIVSRFQEVFGILR
  219-  238 (33.40/27.04)	GQLSSNDKKAKVQEQFRTIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07869 with Med30 domain of Kingdom Metazoa
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