Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MSSTAASSLGSMLPANIMANGGGKTSSKAMMELKPTVAGGAAGKGHGKLLPGSGDKHESWQMELLMERLRNKAKSSQYKSFQEMSKAVRMSLLEKRYALDAVEKSNLQKTLDSMQYCIKVTSRQGLVERLDCLTRQLGLKLSEDTSGLFISSDMFYLEIILDPNGTVQDVKVHHECKMKQQSCSELVSCLQRGDFVDFTTQLEGLASIYQLNAEKKIKVNAFVALQALETDLYYLYTLSTQHYTDIHSLLLKSPLGVVQKRRGGHAMKLTYYIAPHDLLDLEAKKEKPLNTELISTEKIGYSVAVNLEASTANKVQIQPLLVQQGNSPVYSPIEKHNSTSLPATFVLRLNKPMALNVAMLKQIKLITGDGSTATNDSSPASNTDLISLIVQHASNGTVNNITRGLFVALPDQYHCYYMTECKNLKGTIISSIPFTEPQHVSKILVFLRQQALFNQLLTSCIRNNGSSSTRVTDYEHLVVFEVAALSCQYITVSLEHPFEESLAMVEFDLSNVLSIQVRVFCNGYESDERLSKRVSAIVQRTMSIPVTLWRLMKIWQEEYEVKFKGQGTGGQGNGTVDEGNFSLSMGPDEGGGNGPAGPGGGGGGTAMNGQMSGNLNGTGMVHQEFCDVKKVKLEPMDPSKKRRTVEDFCKSPKSSKVESEEGDQEMDEEDDDDEYDESTNLSSGDSNSLGENQQTNAGQSSSSTAAMGAPAPVSSVGPRNTISGNGSESSGNSSILGGLDFSSLDPDLMRSSNSSDLDDTAEASEPEIKVKSEEPNYATSVSITPIGVVKSSGSLSNSALNNIGLDKRPGIEIIPLATAGTNIPSSITITPIPMGTSGGSLKSSTGDSGSSDKKLSVSSSGSIHRKSGSSSSSSTSESDRAKLEKKKKRRHEEQLAQLQQMGPPHKILSKSSDGPGSPSGSSRKFSVSPVPLKSGSGSSSSSQIFLSGGSPGSGSKSSPKHSPVHHSSPKHQSSSYGTSSPKHISGGGSGGGKPSMSALKSATSSGSPSSKSSTSGGNPAAGKEECSSGASGTKSSGSGGSSSSRDRDRDRDRERSEKKSGYSSSSSSSSPKLKSPAVKLKQLDLANCGSALSAGVQLELMNSNSSGGSSSGSGSLDLTDSGLFGIGAADLSKNSSAAAASAAGMLLLQQAMKRKGSLSAVIDKLKSAQGGDESSLMLLPELAQQAGFALKESGKSVSSAPSSSAPTSSTSSASVSNHLPGGVSINPASSAAAAALAAHFSSAAAVAAMQAKNSEYMVKPSSDGIKLTIQNKKGSKSGSSGGSSSSSSSSASKSSSKSGTKPPSISGGSMPPKKLPSSQSFSGTYPPTTGSSSSSSGKSLSSGSSSKAPFQKSSSSGSLSSSGNSTMRPSSKSGSSSSSGGGSSSSKDKSRSSSKSSSSSSAAAASLMATNVAMAAAAQAAVNANALNVMKMLGLTSSIQNMEGFVKTLDTKFQIPKLSARSSGGGSSGSGHAGGSDIEKLKQESRPSSSSAPTTPLSNVAQSPTGGNDFSLPFNKLPGDVSPLHSAMLPNVMQKMFPGHDSSMLMRRSPNLDHQSSGNSRDGFSSIYGKGSTTPTTPTGSVPPPFPSPVGMQSHAMDFSNSSDSADASLMRPPSRPSSTMSNHSSSDKLIDATTNSNSMDGLRSTSPAQALAVAAQLINKLDHTQQFVAALKNHHHHLSALSLSNAAAVAAAAASASGGSAGPGPVTSPTSVSVHIMKSPVPSPLPLHGAVAPDEDDTLVGFSGK |
Length | 1746 |
Position | Middle |
Organism | Aedes albopictus (Asian tiger mosquito) (Stegomyia albopicta) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Aedini> Aedes> Stegomyia. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.433 |
Instability index | 56.30 |
Isoelectric point | 8.96 |
Molecular weight | 180547.98 |
Publications | PubMed=26483478 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07838 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 9| 542.42| 65| 65| 1275| 1339| 1 --------------------------------------------------------------------------- 858- 916 (56.09/11.09) SSSGSihrkSGSS........SSS....STSESDRAKLE...KKKK............RRHEEQLAQL...QQ..........M.G..PPH..........KILSKSS..DGPG 917- 985 (52.40/ 9.81) SPSGS....SRKF........SVSpvplKSGSGSSSSSQiflSGGSP..G..SGS...KSSPKHSPVH...HS..........SPKHQSSS..........YGTSSPKhiS... 986- 1031 (55.32/10.82) ..GGG....SGGG........KPS....MSALKSATSSG...SPSSK..SSTSGG...N..............................PA..........AGKEECS..SGAS 1033- 1095 (44.31/ 7.01) TKSSG....SGGS........SSS....RDRDRDRDRER...SEKKSgySSSSSS...SSP..KLKS......................PAvklkqldlanCG.SALS..AG.. 1198- 1254 (49.24/ 8.72) ....S....SAPS........SSA....PTSSTS.SASV...SNHLP.....GGV...SINPASSAAA...AA..........LAAHFSSA..........AAVAAMQ..AKNS 1275- 1339 (114.27/31.20) SKSGS....SGGS........SSS....SSSSASKSSSK...SGTKP..PSISGG...SMPPKKLPSS...QS..........FSGTYPPT..........TGSSSSS..SGKS 1341- 1383 (55.90/11.02) SSGSS....SKAP........FQK....SSSSGSLSSSG...NST..............MRP....SS...K............S.................GSSSSS..GGGS 1466- 1551 (53.08/10.05) GSSGS..ghAGGSdieklkqeSRP....SSSSAPTTPLS...NVAQS..P..TGGndfSLPFNKLPGD...VSplhsamlpnvMQKMFPGH..........DSSMLMR..RSPN 1552- 1613 (61.81/13.06) LDHQS....SGNS........RDG....FSSIYGK........GSTT..PTTPTG...SVPP.PFPSPvgmQS..........HAMDFSNS..........SDSADAS..LMRP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 217.79| 44| 45| 752| 795| 2 --------------------------------------------------------------------------- 618- 658 (35.49/10.66) TGMVHQEFCDV...K........KVKLEPMDPSKKRRTV.................edfcksPKSSKVE. 659- 702 (39.31/12.62) .SEEGDQEMDE...EDDDDEYDESTNLSS.G...DSNSL..................genqqTNAGQSSS 704- 759 (35.19/10.50) TAAMGAP.APV...S..........SVGPRNTISGNGSEssgnssilggldfssldpdlmrsSNSSDLDD 760- 802 (65.16/25.90) TAEASEPEIKV...KSEEPNYATSVSITPIGVVKSSGSL.......................SNSA.LNN 803- 852 (42.64/14.33) IGLDKRPGIEIiplATAGTNIPSSITITPIPMGTSGGSL.................ksstgdSGSSD... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 64.11| 16| 29| 567| 582| 3 --------------------------------------------------------------------------- 567- 582 (31.22/15.64) GTGGQGNGTVDEGNFS 597- 612 (32.89/16.94) GPGGGGGGTAMNGQMS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 83.13| 26| 29| 1101| 1129| 4 --------------------------------------------------------------------------- 1101- 1121 (28.95/ 7.60) ............MNSNSSGGSSS........GSGSLDLTDS 1122- 1151 (28.84/14.84) GLFgigAA...dLSKNSSAAAAS........AAGMLLLQQA 1156- 1193 (25.34/ 6.19) GSL...SAvidkLKSAQGGDESSlmllpelaQQAGFALKES --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.69| 18| 274| 1407| 1424| 8 --------------------------------------------------------------------------- 1407- 1424 (30.63/23.31) LMATNVAMAAA.AQAAVNA 1679- 1697 (22.06/14.31) LSALSLSNAAAvAAAAASA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AVKLKQL 2) EQLAQL 3) KKKKRRH 4) PHKILSK | 1077 893 885 904 | 1083 898 891 910 |
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