<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07797

Description Uncharacterized protein
SequenceMSGANPPRSVTPNAQQDYDVTRMREEDFERLAVYIVPDMPCEKGVPGRAEKTLPRSLTLKPSLVLSTPTSTTEGVWSTGVIPRGTRFGPFEGVRTPSHPSDKQLWRYFWRIFKDSDFFYLDGSDTTQANWMRYVASAYSFSVMNLVACQHQEHIYFYTIRDIMPNEELMVWYCRDFAKRLGYDIDPERATYSICREEVVKKTYKQPVPAEVAYNHVKHVMGLYLPAIRSTPTPSPSPPPVNVPTPTSVLVPSKHLQQQQQGQQQQQQQQHHHHHQQQQQQQMQHHHSHHHQHLHHQTVLREAGRGAALTEQQQQQQQQQQLSRNRSPIRIMIREQSPLRSGPADVKEIDADSPISQKETVHYEHQLTPNDGSVRSDEGYHSNGYHEDGFTPPEDSSDSESEHNYVLDCSKKAIEPKETSVPHKAHVVVIGGGGGGVGGGASSINGTPVGTIGPGTEIVDKNEYRKVKMKMPLKYEFKNNKHFKAEKELEMERQRERERELDELPSDRDTLATSPSTTTSATTTATAVIPSATTIREVTPATSTVIVLETKPDPTVVPLTKTYYEAEPSTSPPATFIRYTPPSSSILETILTGSGVGRSIGSADESHRNRQPNATPPPTSPTEMAYSYKKSQRYGTACSPDSSSQNPQAAEQAADALPTHRSHPLLPGAKDEEDMDLEEEDMDEDMEQQHHRHHHGVVHHHPHHHHQLVHSQQQQQQQQQSPYPHHHHHHLERLHERDEIARSPSPLYSSASSDHHHPHSHHPHHHHHHHYLQSHHTQPGYEPPVQGYGLYPASSVINSASSSTYSPPLNGGHYERLTNNTSTSSTSSSSSTNGHGTAATTTTGSSPSGASGSSPGAPSIATTPSSSSSASPPQSGVAPPGSASVRSGSGSPARRGRSPGTPGATTTPFVQQLQSKGQLPLGHPLMQPLTPLTHLSPGRGSPPSSLSPDGGSYSRSGSPMSPGSPNSRGYRSLPYPLRKRDGKMHYECNVCSKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCAGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDGQPDGDGGREFYEMHLSSSQQQQQQQQQQDAGRSPSQHGRHPSPSSQHPHHPHLHPAPGSLTPLHTPEQVIHKVSAGKVQVQHHHPPNGNGSAPASNGTPGSNNNNNNSSSSSTNHNLPPQHHLHYAGHLVSNGGAASGHHYHHQQQQQHHHHHYQQPSPQQPAAAAAVSSQQPSSVAAASAASNSASTPETSRPSVIESSQPMVIECT
Length1353
PositionTail
OrganismAnopheles albimanus (New world malaria mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.05
Grand average of hydropathy-0.949
Instability index68.44
Isoelectric point7.57
Molecular weight149012.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA-binding transcription repressor activity, RNA polymerase II-specific	GO:0001227	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07797
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     430.59|      56|      60|     692|     748|       1
---------------------------------------------------------------------------
  243-  283 (52.38/14.72)	..........PTPTSVLV.....pskHL..QQQQQGQQQ......QQ....Q..................QQHHHHHQQQ..QQQQMQ.............
  692-  748 (111.58/44.14)	H.HHGvVHHHPHHHHQLV........HS..QQQQQQQQQ......SP....Y..................PHHHHHHLERLHERDEIA.....RSPSPLYS
  754-  827 (75.02/25.07)	H.HHP.HSHHPHHHHH..........HHylQSHHTQPGY......EPpvqgYglypassvinsassstysPPLNGGHYERLTNN.........TSTSSTSS
 1159- 1191 (44.87/11.35)	..........................HL..SSSQQQQQQ......QQ....Q..................QDAGRSPSQ..HG..........RHPSPSSQ
 1192- 1247 (72.38/23.88)	HpHHP.HL.HPAPGS.LT........PL.....HT.PEQvihkvsAG....K..................VQVQHHHPPN.GNGSAPA.....SNGTPGSN
 1260- 1320 (74.36/24.77)	H.NLP.PQHHLHYAGHLVsnggaasgHH..YHHQQQQQ.................................HHHHHYQQPSPQQPAAAaavssQQPSS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     197.90|      23|      25|    1028|    1050|       2
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  976-  994 (33.08/17.00)	LRKRD.....GKMHYECNVCSKTF
 1000- 1022 (41.47/23.32)	LKVHLR.THSGERPFKCNVCTKSF
 1028- 1050 (44.91/25.92)	LQKHHL.VHTGEKPHQCDICKKRF
 1056- 1078 (38.22/20.87)	L.KTHLrLHSGQKPYACDLCPQKF
 1084- 1106 (40.22/22.38)	LKLHKR.LHTNDRPYVCAGCDKKY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.18|      18|      19|     863|     880|       3
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  863-  880 (34.02/14.37)	P......SSSSSASPPQSGVAP..PG
  883-  902 (24.35/ 7.71)	S......VRSGSGSPARRGRSPgtPG
  927-  949 (22.81/ 6.65)	PltplthLSPGRGSPP.SSLSP..DG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.13|      14|      20|     361|     380|       4
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  361-  376 (22.00/10.05)	HYEHQLTPNDGSvrSD
  384-  397 (27.13/14.13)	YHEDGFTPPEDS..SD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.23|      13|      20|     828|     840|       6
---------------------------------------------------------------------------
  828-  840 (23.45/10.95)	SSSTNGHGTAATT
  850-  862 (23.78/11.22)	SGSSPGAPSIATT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.07|      32|     482|     635|     681|       8
---------------------------------------------------------------------------
  601-  632 (58.80/34.66)	SADESHRNRQ.....PNATPP....PTSPT...EMAYSYKKSQR
  638-  681 (40.27/44.29)	SPDSSSQNPQaaeqaADALPThrshPLLPGakdEEDMDLEEEDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.87|      26|     444|      60|      85|       9
---------------------------------------------------------------------------
   60-   85 (46.37/26.52)	KPSLVLSTPTSTTEGVWSTGVIPRGT
  507-  532 (42.51/23.66)	RDTLATSPSTTTSATTTATAVIPSAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.73|      19|      21|     413|     432|      10
---------------------------------------------------------------------------
  413-  432 (28.03/19.68)	IEPKETSVpHKAHVVVIGGG
  436-  454 (33.70/18.62)	VGGGASSI.NGTPVGTIGPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.87|      10|      15|     328|     338|      11
---------------------------------------------------------------------------
  328-  338 (12.77/12.79)	IRiMIREQSPL
  345-  354 (15.10/ 8.52)	VK.EIDADSPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.43|      11|      38|     913|     923|      12
---------------------------------------------------------------------------
  913-  923 (20.38/ 8.49)	QSKGQLPLGHP
  954-  964 (20.33/ 8.44)	RSGSPMSPGSP
  965-  975 (20.72/ 8.79)	NSRGYRSLPYP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07797 with Med15 domain of Kingdom Metazoa
Unable to open file!