<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07788

Description Mediator of RNA polymerase II transcription subunit 31
SequenceMPISSPPNSQKMKFSRNIMYFTQELTYVKLLWNGCKHHSLHTTPTPTPTHKLVQISIRAMANKMVGKGKLAVESEDAQKLRFQVELEFVQCLANPNYLHFLAQRGYFKDAAFVNYLKYLLYWKEPEYAKYIKFPMCLYFLDLLQYEHFRREIVSAQCCKFIDDQAILLWQHYTRRRTRLTALGTTSLTGLAVGGQPVGGGVQGTLLSNEPSIMASCNNGNNGSQNSSSNNGTMSGGGGLLNSNSMNSNNGPNGGAVVGVNMAPSSAQQSIAQNGGASMTQHNGVGGLLMGNPLGSLGSGAVGGGGGSVTGSGGGGGGGGSINQKVP
Length326
PositionMiddle
OrganismAnopheles albimanus (New world malaria mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.08
Grand average of hydropathy-0.268
Instability index42.29
Isoelectric point9.41
Molecular weight34721.06
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364129

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07788
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.69|      14|      15|     225|     238|       1
---------------------------------------------------------------------------
  225-  238 (27.15/10.06)	NSSSNNGTMSGGGG
  293-  306 (22.93/ 7.39)	LGSLGSGAVGGGGG
  308-  319 (22.61/ 7.19)	VTGSGGG..GGGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.42|      15|      30|     206|     222|       3
---------------------------------------------------------------------------
  206-  222 (21.16/24.14)	LSNEPSiMAScNNGNNG
  239-  253 (30.26/19.94)	LLNSNS.MNS.NNGPNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.52|      17|      24|     128|     150|       4
---------------------------------------------------------------------------
  136-  156 (26.48/32.45)	CLYFLD...LLQYEHF..RReivsAQ
  157-  178 (24.04/10.47)	CCKFIDdqaILLWQHYtrRR....TR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07788 with Med31 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CNNGNNGSQNSSSNNGTMSGGGGLLNSNSMNSNNGPNGGAVVGVNMAPSSAQQSIAQNGGASMTQHNGVGGLLMGN
216
291










Molecular Recognition Features






MoRF SequenceStartStop




1) SINQKVP
320
326