<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07775

Description Uncharacterized protein
SequenceXIPYASSQPGAPQHSPFMGQSAQFCSPPGMMNATNPIYSFPGGTMCSMNTDPMQSSHILSGIHSTTPSQSFSANSMHGAGPPNGQFCMQQSQQPFQQLNHFVNNANFNGQMGMGAINPSQQNIYQQQMMFRCNMGGNLTPQHAIHLSDSYGTDSQIRSNQAPVEPPPSFSQAVNHQYPPVHNVQAGSVMYSQSSHIMCPNTLIAQAQNANMIYGPRTPQNSMMTVPSSIGSPNNGGLFGNRLMNMPAVMETTAVPPSRMRYPEGKSLVLAVLLQDTVLDLHYDSVFDACPICSCNGSIRAKELGVYITPPEVLRQPPAQQQLIVSKPTSGFYNNTSNSCNCGFSAVRHRYLSMKAGLFAEDAKEATDISETQNQPAIPHTIWFDSMSGRDMNFIALLREQTLVRDLGGLLDQVTLLSLQCERALQTERIGSDSSKHCEYIISEVDQRELPLVFQAACEVACMEMNCRRPPHDVRSVLLHDWGIQVSNEMREPRESECMALLQEIGPILEESLRIARSSPLFGSNNIVEGPLTWRFFDRKALKAAGGMEDDSGPEAVPNIVVASEKDAVIASPQIIRLWEKMSLEPYDQPKDVLYIGVVPDNLICIEKTKKYLMDLSRMYEQCRFGRHIPFTREVLRDGLLRVPTRYPATNPGECDNFLNQVERHIGDNKSLITRLKVYMQYFENEMARILINNDDIFSREKYRAALAESQMHSMSHISASYQCAGYTVSNSDHMPPSSAPGNIIIGQSTEASQNVSNASGPSSAGPASSSVGESLTSDGPIGDGSAQNINSFSSFMVEQLIADGTIAEDEPGTLPHVIVIYLVSIYI
Length827
PositionMiddle
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.07
Grand average of hydropathy-0.316
Instability index60.96
Isoelectric point5.41
Molecular weight90794.70
Publications
PubMed=22919073

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07775
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     359.48|      74|     149|       6|      84|       1
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    6-   80 (137.88/65.37)	SSQPgAP.QHSPFMGQSAQFCSPP.GMMNATNP....IYSFPGGTMCSM..NT..DPMQSSHILSGIHSTTPSQS.FSANSMHG.....AG
   91-  159 (91.61/42.63)	SQQP.FQ.QLNHFV.NNANFNGQM.G.MGAINPsqqnIYQQQMMFRCNMggNL..TPQHAIH.LSDSYG.TDSQ..IRSN...........
  160-  231 (88.99/38.45)	..Q..APvEPPPSFSQAVNHQYPPvHNVQAGSV....MYSQSSHIMCP...NTliAQAQNANMIYG..PRTPQNSmMTVPSSIG.....S.
  735-  779 (41.01/13.16)	................................P....PSSAPGNIIIGQ..ST..EASQNVSNASGPSSAGP......ASSSVGesltsDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     236.44|      73|      96|     334|     412|       2
---------------------------------------------------------------------------
  334-  412 (113.30/92.07)	NTSNSCNCGFSAVRHRYLSMkagLFaEDAKEATDISETQNQPaiPHTIWFDSMSGRDMNFIALLREQ......TLVRDLGGLLDQ
  432-  510 (123.14/81.55)	DSSKHCEYIISEVDQRELPL...VF.QAACEVACMEMNCRRP..PHDVRSVLLHDWGIQVSNEMREPresecmALLQEIGPILEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.25|      20|      22|     657|     676|       5
---------------------------------------------------------------------------
  657-  676 (33.37/25.66)	FLNQVERHIGDNKSLITRLK
  682-  701 (33.88/26.17)	FENEMARILINNDDIFSREK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07775 with Med13 domain of Kingdom Metazoa
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