<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07771

Description Uncharacterized protein
SequenceMSSALLENSTGNNNKINWPITDGQELIDILETVYRGARKGRGLVREFHMMADRLTQLQDLVNELANLMCNSIGVLRLTAPSCDFNGTSKALEEEENCGLFAATIAHTAKDIEILIDSLPLDEPAASNSEIDSSLLNMDEQRHRAARELEQAVVDGEELIKKIQMALAEIARVQMLSRPFV
Length180
PositionMiddle
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.03
Grand average of hydropathy-0.198
Instability index43.45
Isoelectric point4.66
Molecular weight19937.46
Publications
PubMed=22919073

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
U4/U6 x U5 tri-snRNP complex	GO:0046540	IEA:InterPro

GO - Biological Function
GO - Biological Process
mRNA splicing, via spliceosome	GO:0000398	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07771
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.45|      25|     130|       3|      27|       1
---------------------------------------------------------------------------
    3-   27 (44.19/34.72)	SALL...ENSTGNNNKINWPITDGQELI
  132-  159 (35.26/26.28)	SSLLnmdEQRHRAARELEQAVVDGEELI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.49|      15|      15|      43|      57|       2
---------------------------------------------------------------------------
   43-   57 (26.26/15.00)	LVREF.HMMADRLTQL
   60-   75 (21.23/11.13)	LVNELaNLMCNSIGVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07771 with Med21 domain of Kingdom Metazoa
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