<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07768

Description Uncharacterized protein
SequenceMQKNLHLIDYKGLRNILKLLVVERMQEVPSTITHHHRHMLLPVENMLLTLIDRQLNLLPCIFTITELHRVSSNSRAFLLPRVAKKFNDMFISFRPLTEMVTIIGRSWLYPIAAHISFPVSTPSWKLEVTTTRLHQRAHLPYKSELFAPQSFLLYTLLRQPRGKDTISYVMRQNTNLTPQRLQCDELLHMIILEAMSEMEKTDARLDDPANQYQWMNITQTVTFSLLHGNASFSRLLKILYESLSETVYRKGRDELMWVILQYVAVYIDRVSNEEMVRVAEIYNLLYSDEQTWSGADTDPLLFVRFLVPAAIWIHFYKKLGNSQTDVLPKPSGSLWRQIQFLQERTADSDPNIQNVADHNAVLAAVANAYSSDMPNFQKLVLTAIDVFLDGSPEEINTVWHLPYGIISYSKKTPLPLSLIDSLTFHARNHLFQLYTLVRLAVTTEFEYGVKQVLALLSSTLVSVNKNTNLGPAQQDRSRDLLFVLCDILSYRFISYPFPVGSKVNLMLWCYTALGNSQVQMNIALCSALEQVMLRYWMWNSPQEMFYLSNAFLGMEMTAEMMQRCNVNFCWPLSINRTYSSQLIGCSVDDGAADTVIYDELMHRVIQEVHQVQEIIYAQGLAAEEQLLKFFSGERRQTIFCVVYNMLFETKKIHPVIYSVLNSMNSKELTATINKFTDYFIFIFKKNLPSDDQQFAAMIGILNDMAFNLHLIPLDRLLTSLVLHPTDDGATEIAMLIIHSLIGSYPDLHNRITALVHIIPSNKIGNTSAAFFNKMSEYYSQFPELSYKEMEAKMRREMQIELGMRPIEQPIVSPELHMPIYYGNIMERILPIVDIILFRAIETVVADQLFTTLLMCFKPCYRYHPQPAAYMYSVLYCLDKTISHTVRARDFVLEICGQLEDRDGKYALLTPSFISDNHQLSLPSQFCQALVDRILQASNYAHQPPVFASKDWRFAEMPPAGQALTGACIELLASPHAPLISAHALIDLVFIRPLHQPYATINAVALILTALPVSFQQVFYEHIVSVLDSEALHGDPSVCFGSLENECFLLTENQLLTNLALGHAYLQHCNTVRIQYDCFM
Length1079
PositionTail
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.10
Grand average of hydropathy0.060
Instability index43.44
Isoelectric point6.02
Molecular weight123724.06
Publications
PubMed=22919073

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07768
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.04|      13|      38|     369|     385|       1
---------------------------------------------------------------------------
  369-  385 (17.29/25.82)	YSSDMPnfqkLVLTAID
  408-  420 (21.75/15.06)	YSKKTP....LPLSLID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.24|      25|      40|       5|      42|       2
---------------------------------------------------------------------------
    5-   42 (40.23/42.96)	LHLIDykglrnilkllvvERMQEVPS..TITHHHR......HMLLP
   48-   80 (35.00/17.46)	LTLID.............RQLNLLPCifTITELHRvssnsrAFLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.56|      25|      39|     638|     663|       4
---------------------------------------------------------------------------
  638-  663 (39.84/29.78)	IFCVVYNMLFETKKIHPVIySVLNSM
  680-  704 (43.71/27.34)	IFIFKKNLPSDDQQFAAMI.GILNDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.17|      39|     184|     799|     860|       5
---------------------------------------------------------------------------
  744-  784 (63.31/65.42)	YPDLHNRITALVHIIPSNKIGN.TSAAFFNKMSEYYSqfPEL
  821-  860 (63.86/35.08)	YGNIMERILPIVDIILFRAIETvVADQLFTTLLMCFK..PCY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.10|      24|      37|     905|     941|       6
---------------------------------------------------------------------------
  895-  925 (36.61/23.73)	CGQLEDR...dgkyallTPSFISDNHQLSLPSQF
  926-  959 (38.50/32.67)	CQALVDRilqasnyahqPPVFASKDWRFAEMPPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.13|      16|      38|     172|     188|       8
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  172-  187 (30.15/24.57)	QNTNLTP.QRLQCDELL
  465-  481 (24.98/12.45)	KNTNLGPaQQDRSRDLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07768 with Med23 domain of Kingdom Metazoa
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