<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07765

Description Uncharacterized protein
SequenceMAIRARGQIRIIKNKKRAMNYVDQQQFIMQQGQRMQNPRMISVPTTVTPQHMHRQQRYGMAMMQPGQQPVQIVSGQYVQNPQMQPRLLTISDALSRLPPEVQQMAQQQINAETNAEKKRQVALGFIQGRVRLTQQYPGQGTMNTGGMMISVGLNQQVGMSQGNTQMVRMGTVQSGPVPYPAQNVSLQTGVGQMGPTQVSVQRMPNHYMASGMSAAQNIQYQSQDLGNAQNYNSQQQVTLTQPSSVGSAVQQTSSLHHKGPSSVPSAIYTQHHPENSAAAHSTTGSEGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIERDSLCFPLIDALRLESADATKTPLPDPWGDFHQYAIKIPEKVMSIIKEEKTKSREEKDVIPIKRIKKEEGSDERIAVICQDGSRLELSQEASDQLRPYNYKFDPEFIPISDDCTEIQVFIENDILLVPPLRLVIPLNYPESRASIWRDRWSYGGVSLVDINTQFDKRLNMAVNCRTITEIVNAWKLASLHVLKIGSSSAST
Length559
PositionTail
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.05
Grand average of hydropathy-0.571
Instability index46.15
Isoelectric point9.29
Molecular weight63019.26
Publications
PubMed=22919073

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07765
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.75|      15|      15|     234|     248|       1
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  234-  248 (27.43/14.73)	QQQVTLTQ..PSSVGSA
  250-  266 (24.31/12.34)	QQTSSLHHkgPSSVPSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.57|      13|      15|     139|     152|       2
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   60-   72 (21.89/13.38)	MAMMQPGQQPVQI
  139-  151 (23.68/ 8.85)	QGTMNTGGMMISV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.58|      13|      16|     170|     182|       3
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  170-  182 (24.47/12.45)	GTVQSGPVPYPAQ
  199-  210 (16.33/ 6.00)	.SVQRMPNHYMAS
  211-  223 (19.77/ 8.73)	GMSAAQNIQYQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.18|      16|      16|     300|     315|       4
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  300-  315 (26.73/21.71)	LELLKPYHEHIKRLLE
  319-  333 (23.26/17.87)	LDGQAP.KSKFERLLE
  343-  358 (21.19/15.58)	LKLLEKLVVSVRNLIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.69|      10|      29|     156|     165|       6
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  156-  165 (19.82/ 9.76)	QVGMSQ.GNTQ
  187-  197 (15.87/ 6.56)	QTGVGQmGPTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.67|      15|      47|      26|      43|       7
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   26-   43 (18.94/20.10)	QFImqQGQRMQnPRMISV
   76-   90 (26.73/14.25)	QYV..QNPQMQ.PRLLTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.05|      14|      26|      93|     107|       9
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   93-  107 (20.15/17.62)	ALSRLPPEVqQMAQQ
  122-  135 (23.90/15.23)	ALGFIQGRV.RLTQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07765 with Med15 domain of Kingdom Metazoa
Unable to open file!