<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07762

Description Uncharacterized protein
SequenceMIVNESRKWEEEGGNFSLSLRRSHCQQFGLSDNESLARMSLKGPGECYVNWNKVALDMATFDVTRSRIFAPESCMSTNGGSLEDCHTNVFALTELNGLKWKCLTTPLSQRTWTSLEQDPVLSAYAKCLQAGILCAWRRQPPQPTSTLAAMQLPDYRIDVVKELWIFWYSHEEPDCLTEYTSHLACAEDGQGNWSVPGIQYETRTLFFKALHNLIERNMLKNGYIRIGKYFTRPYEVPSSDRIHCSPNYVNGISFNFFVHGENIVCATVCVQRQPTLFRLSRRHLDLGKKQSVILGPWSMRAVLLPEQPRIVDSTTPILQQQPLTPECDSFTNSSTAYASSYREPLSSVAHQVNPVPSSSVESDTVNSSNHDSAGTISKAAVDKLWSEWLQFFCLIVNVERNLSSADTVGYIGYTENASSIKSSLPKMVLVDVDGVHMWYPSSLIVVQASDDLLMRQNEKTTNDSSSDFFNSRTSSRSFTPRTPPTTRLRSSPSFRKRKKRLSECDVEASAEWHNAMYGTMVNGARAAQRFFEESFIAPANSRRKENSESPSSSGLGLLLSSATSDDDCRWNSTDGMRRKDREEGCGCHHCRLQQPSDTAAVSNLSSQYTCLSQEPSQSCCTPINFPSNSSSLEARKEEPILFHRRSSLCTRSPSPPRSPLWEKKILATSSEAVDGEHSLDWIRENYFRNSKSNSRSGRSDPLNEEKHVCPKTPDASAITESPERRRVQRNSVQMFGKIGSCKPVYQNLSPTSRPRSPACDTSQTESLSRMQSKDCLSSDFVPLSARKHEPTIAEQQPNLINSLRLKKEEKSKGRKRKLNEKLEWSGIEALDVSFLTAKVGEDDEDGDDINFICSNKFKLHECKLEIKDEAIESSSRESAASQSGSLNAVSLSQAQDGLRNLPVFSQIGSVLSSNTSVNLTPSIFTSDCDTQPLFVDDCNLSTIAMIERRSPVDTVVTDSVHLSPPASNERVEPTQILGGTVANVIARVGGPPSVGDYMIYPTPPSSQQFSPQNTLIQANPTSILYPPTISYMAAAVNLCYNHPPVQPSGIVSETDITMETVPNVKRELDNDDGRLLGKLHYSIVEKPVYGKFMKLEMALSGKFAGNILAKEFLSLEAKECRILEGVYADQLKLIKTAVAAREKRKKVGRAPDYLFMRERLRNLTPHSSFAAVRYYRMPYNNGHMLSSHSLPTFQMLPYGMAMNGMPNFVTNGPPFAGTSYNGGNSMMSMMMGNSCIPPSSTAVMQSMPGSSRMNFVHMNQQMSMAHLRPLARIPYASSQPGAPQHSPFMGQSAQFCSPPGMMNATNPIYSFPGGTMCSMNTDPMQSSHILSGIHSTTPSQSFSANSMHGAGPPNGQFCMQQSQQPFQQLNHFVNNANFNGQMGMGAINPSQQNIYQQQMMFRCNMGGNLTPQHAIHLSDSYGTDSQIRSNQAPVEPPPSFSQAVNHQYPPVHNVQAGSVMYSQSSHIMCPNTLIAQAQNANMIYGPRTPQNSMMTVPSSIGSPNNGGLFGNRLMNMPAVMETTAVPPSRMRYPEGKSLVLAVLLQDTVLDLHYDSVFDACPICSCNGSIRAKELGVYITPPEVLRQPPAQQQLIVSKPTSGFYNNTSNSCNCGFSAVRHRYLSMKAGLFAEDAKEATDISETQNQPAIPHTIWFDSMSGRDMNFIALLREQTLVRDLGGLLDQVTLLSLQCERALQTERIGSDSSKHCEYIISEVDQRELPLVFQAACEVACMEMNCRRPPHDVRSVLLHDWGIQVSNEMREPRESECMALLQEIGPILEESLRIARSSPLFGSNNIVEGPLTWRFFDRKALKAAGGMEDDSGPEAVPNIVVASEKDAVIASPQIIRLWEKMSLEPYDQPKDVLYIGVVPDNLICIEKTKKYLMDLSRMYEQCRFGRHIPFTREVLRDGLLRVPTRYPATNPGECDNFLNQVERHIGDNKSLITRLKVYMQYFENEMARILINNDDIFSREKYRAALAESQMHSMSHISASYQCAGYTVSNSDHMPPSSAPGNIIIGQSTEASQNVSNASGPSSAGPASSSVGESLTSDGPIGDGSAQNINSFSSFMVEQLIADGTIAEDEPGTLPHVIVIYL
Length2093
PositionMiddle
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.07
Grand average of hydropathy-0.423
Instability index61.07
Isoelectric point6.23
Molecular weight231926.48
Publications
PubMed=22919073

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07762
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.27|      28|      39|    1179|    1206|       1
---------------------------------------------------------------------------
 1179- 1196 (24.28/ 7.75)	........................Y..NN.GHMLSSHSLPTFQML
 1197- 1237 (41.23/18.61)	PYGMA.MNGMPnfvtngppfagtsY..NG.GNSMMSMMMGNSCIP
 1238- 1273 (26.05/ 8.89)	PSSTAvMQSMP.......gssrmnFvhMN.QQMSMAHLRP.LARI
 1344- 1369 (36.70/15.71)	ANSMH.GAGPP..................nGQFCMQQSQQPFQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     352.29|     117|     516|       2|     147|       2
---------------------------------------------------------------------------
    2-  138 (166.80/136.71)	IVNESR...KWEEEGGNFSLSLRRSHCQQFGLSDNESLARMSLKGPGECyvNWNkvaldmaTFDVTRsRIFAPESCmSTNGGSLEDcHTNVFALTELNGlKWKCLT........TPLS.QRTWTSLE...QDPVLsaYAKclqAGILCAwrR
  520-  651 (185.49/98.23)	MVNGARaaqRFFEESFIAPANSRRKENSESPSSSGLGLLLSSATSDDDC..RWN.......STDGMR.RKDREEGC.GCHHCRLQQ.PSDTAAVSNLSS.QYTCLSqepsqsccTPINfPSNSSSLEarkEEPIL..FHR...RSSLCT..R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     319.67|      66|     727|    1276|    1341|       3
---------------------------------------------------------------------------
  999- 1047 (71.08/33.39)	......IYPTPP.......SSQQFSPQN............................TLIQANPTSILYPPTisyMA....AAVNL....CYNHP............PVQP
 1276- 1326 (90.42/44.69)	..................ASSQPGAPQH............................SPFMGQSAQFCSPPG...MM....NATNP....IYSFPGGTMCSM..NTDPMQS
 1327- 1414 (69.98/32.74)	SHILSGIHSTTPSQS.............fsansmhgagppngqfcmqqsqqpfqqlNHFV.NNANFNGQMG....M....GAINPsqqnIYQQQMMFRCNMggNLTPQHA
 1425- 1497 (88.19/43.39)	SQIRSNQAPVEPPPSfsqAVNHQYPPVH.......................nvqagSVMYSQSSHIMCPNT...LIaqaqNA.NM....IYG.PRTPQNSM..MTVP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     213.72|      57|     510|    1060|    1117|       4
---------------------------------------------------------------------------
  722-  785 (72.39/44.95)	..PE.RRRVQRNSVQMFGKIGSC...KPVYQNLsptsrprspacdTSQTESLSRMQSK.DCLSSDFVPLSA
  795-  835 (52.40/30.34)	QQPN...........LINSLRLKKEEKS.KGRK............RKLNEKL..EWSGiEALDVSFL....
 1060- 1117 (88.92/61.36)	TVPNvKRELDNDDGRLLGKLHYSIVEKPVYGKF............MKLEMALSGKFAG.NILAKEFLSLEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.64|      63|     585|     298|     361|       5
---------------------------------------------------------------------------
  298-  361 (106.59/56.16)	SMRAVLLpEQPR..............IVDSTTPI.LQQQPLTPECDS...FT...NSSTAYASSYREPLSSV....AHQVNPVPSSSVE
  885-  972 (75.05/34.81)	SLNAVSL.SQAQdglrnlpvfsqigsVLSSNTSVnLTPSIFTSDCDTqplFVddcNLSTIAMIERRSPVDTVvtdsVHLSPPASNERVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.04|      31|    1117|     659|     721|       8
---------------------------------------------------------------------------
  452-  484 (51.61/15.52)	LLMRQNEKTTNDSSSD......FFNSRTSSRSftPRTPP
  665-  701 (47.44/53.45)	ILATSSEAVDGEHSLDwirenyFRNSKSNSRS..GRSDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.39|      34|    1115|     411|     444|       9
---------------------------------------------------------------------------
  411-  444 (60.69/44.76)	IGYTENASSIKSSLPKM.VLVDVDGV...HMWYP..SSLI
 1500- 1539 (46.71/32.34)	IGSPNNGGLFGNRLMNMpAVMETTAVppsRMRYPegKSLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.15|      41|      45|    1650|    1693|      11
---------------------------------------------------------------------------
 1650- 1693 (65.88/50.10)	HTIWFDSMSGRDMNFIALLREQtlvRDLGGLLD...QVTLLSLQCER
 1696- 1739 (67.27/43.59)	QTERIGSDSSKHCEYIISEVDQ...RELPLVFQaacEVACMEMNCRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.85|      20|      24|    1999|    2019|      12
---------------------------------------------------------------------------
 1999- 2019 (33.08/18.85)	VSNSDHmPPSSAPGNIIIGQS
 2026- 2045 (34.77/15.54)	VSNASG.PSSAGPASSSVGES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07762 with Med13 domain of Kingdom Metazoa
Unable to open file!