<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07754

Description Uncharacterized protein
SequenceMEKESIVERQEQKPVVDSTQSGNYNLVNFNLEEVEEEIRLEKIRQASVKFSWDYLSQLLRRNLMEKRFVLSADDKEDLMQAVADMRKHMPSDSDRDLSTHLRHLAESLSSDFQAHPGYYKIRNTDFSLEVTVSADGQQITSCSVSWFGERAMEAQALRLYISRNRWDLVHTALTAMFHLVPSDLSRDDKIYCLRSLEYAEKDLLNMSGSAPSIFEQINGDILGLCKPRTESTPFTIYPFVEPVIFFDTTSGSIVPPTDEQVLYDVEPYLQLCIVSNSTPNFFSDSTLFAHGEWRTAVSGRQLPAAFCLRFSRPIIFSSAAIKKLSKIALVQLDVEGSYNLYQYLLNENEECHDLFVRLPGCSTQHYIFDNSMMCSREDGILRQIPFAHLQDVVFLVNIIRTQLAHNAFFESLVRAHSRSACVDENIVDIRIASSYIDFFDLQFYLKKNLFIARVAVSPSNTNVSLECVINGAVLPESQHATAILTKSWSLAIMMRSVLRRGGAISLAALEKPFVMNENVDNNCDVKISQSWLFVPNITDSSINYNKIEHEYVVDERINLNYSHDNNTLGRQSPLSLLALFKELEKIEELIPPQKPMNGAQQCTAPPRNEMLAPRTSRIHSENTMTINAFSVLDAICDMAANIDDGESNVSEHSSHSSTNQRLRPQIPPQSPSPASERYRTSQAANFSQLSPLDIARQRLAQQAPMSNPTDVFEFDDPPRMTSASSMATSTQQFHFPEAGQSPYSFAAMQTTRGSLNVQPTLKRRGRGRKAGNVGDRMLDPTRPILDQNTGLIFRGMNIPTRKPRGTSTARRPRRPRKAAHMPVSPVHSHQFAINRPMLQRSFSEMPAYPSQMPSASLSQENRSEASEFDGTEESSDDETDPPPPACAATVPQPSAQFTARSSTPIAQTTTVTSLSSSSATLSLINKSSSLTATSCFPSTSSSGAATELTPPANSSPTSTNNGSVQSAALLAHKARKGSLEAVVGKLHCKTAPTSSSSSTTSNPYLASDLYDDESEPVSKPPEQPTPTKRDSPSVLTSSPGARMSPNLTKINAEQPGYGSELKIMIKLKQQAPTRPSIGPSQTSSGGVPSSMRLVGQPPSSSRSKEEKALLRQKQLKEKNRSASDERARKAGKRERKGEFNSSIKKLKLDRPLSEQKTMTISPKVEFPQALAFASLKNFKIPKVMENEKCESPTPTTTTAPAVATPSSSGAHLNVSQNSSSSTVQAVSSTSLSATLTTTPSSSSSSGTSSIFPPKPKSILKSSVDPPPPPLFRGMGGMPPMLPGRRPLLPDPRNVMHHPPRLEHILNQFRPLVTLPRMAPSVLGGGNFMPPPSSSGRWMALAPQRQPSPKNSPSEQSVSNSGLSDTAAAMSKMQDSPTETLKIVADEE
Length1387
PositionMiddle
OrganismOnchocerca ochengi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Onchocerca.
Aromaticity0.06
Grand average of hydropathy-0.475
Instability index61.54
Isoelectric point8.26
Molecular weight152570.43
Publications
PubMed=22919073

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07754
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.02|      18|      18|     670|     687|       1
---------------------------------------------------------------------------
  654-  668 (20.00/ 7.86)	SHSSTNQRLR.PQIPP..
  670-  687 (31.44/17.74)	SPSPASERYRTSQAANFS
  690-  706 (26.57/13.53)	SPLDIA.RQRLAQQAPMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     504.10|      66|      66|     819|     884|       2
---------------------------------------------------------------------------
  746-  815 (52.55/15.34)	AAM.....QTTRG..SLNvQ..PTL..K.........R....RGRGRK....AgnVGD....................................RMldPTRPILDQN......TG..LI......FRGMNiptrkpRG.T...STAR......................R.P..RRP
  819-  884 (114.84/41.30)	AHMPVSPVHSHQF..AIN.R..PML..Q.........R....SFSEMP....A..YPS....................................QM..PSASLSQEN......RS..EA....SEFDGTE......ES.S...DDET......................D.P..PPP
  885-  952 (55.53/16.58)	ACAATVPQPSAQF..TAR.SstPIA..Q.........TttvtSLS............S....................................S....SATLSLIN......KS..SSltatSCFPSTS.......S.S...GAAT......................ElT..PPA
  953- 1021 (44.09/11.81)	NSSPTST..........N.N..GSV..QsaallahkaR....KGS.LE....A..VVG....................................KLhcKTAPTS..........S..SS....STTSNPY......LA.SdlyDDES......................E.PvsKPP
 1028- 1153 (46.76/12.93)	KRDSPSVLTSSPG..ARM.S..PNL..T.........K....INAEQP....G..YGSelkimiklkqqaptrpsigpsqtssggvpssmrlvgQP..PSSSRSKEE......KAllRQ....KQLKEKN......RS.A...SDERarkagkrerkgefnssikklklD.R..PLS
 1156- 1194 (47.44/13.21)	KTMTISP........KVE.....................................FPQ....................................AL..AFASL....................KNFKIPK......VM.E...NEKC......................E.S..PTP
 1210- 1268 (61.18/18.94)	AHLNVSQNSSSSTvqAV.........................SSTSLS....A..TLT....................................TT..PSSSSSS.........G..TS....SIFPPKP......KSiL...KSSV......................D.P..PPP
 1275- 1332 (48.84/13.79)	GGMP..................PMLpgR.........R....PLLPDPrnvmH..HPP....................................RL..EHI.LNQFRplvtlpRM..AP....SVLGG................GNF......................M.P..PPS
 1333- 1376 (32.88/ 7.14)	.....................................S....SGRWMA....L..APQ....................................RQ..PSPKNSPSE......QS.vSN....SGLSDTA......AA.M...SKMQ......................D.S..P..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.51|      84|     111|      70|     164|       4
---------------------------------------------------------------------------
   70-  164 (126.40/113.28)	LSADDKEDLMQAVADMRKHMpsdsdRDLSTHLRHLAESLSSDFQahpGYYKIR..NTDFSL....EVTVSADgqqITSCS.VSWFGERAM.EAQA.LRLYISRN
  184-  276 (118.12/78.97)	LSRDDKIYCLRSLEYAEKDL.....LNMSGSAPSIFEQINGDIL...GLCKPRteSTPFTIypfvEPVIFFD...TTSGSiVPPTDEQVLyDVEPyLQLCIVSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.22|      13|      94|     422|     435|       5
---------------------------------------------------------------------------
  422-  435 (17.80/15.23)	VDENiVDIRIASSY
  519-  531 (25.41/16.45)	VDNN.CDVKISQSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07754 with Med1 domain of Kingdom Metazoa
Unable to open file!