<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07743

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMTTSLENKSNVTSSKQPNEHYYHQSKQQTTQNNNHHPQQPFINTSPASSSSSTSNHQLNKKTKPECSAQRHPQFDQETLNQIDRVELQRLWGPHLVPLQFVIQRSIAQVFSELQILSQTTPTLDDYHRRKHVIDFVIHSRRQLIKLLVLVKWSSNSAPVHKIMSIVAFLQRQNSQFERNVNILKASKENFHSARMRNYDLPTALQVLTNGYPTLPGRLIDQFDSKPKLSDSEVIKIMQDLNELIRYRLASCEVIPKDFRSYRIYDGRVVFRIERMFECSLTLGGGELDSQWYLLHVEFLFRVTGPRGKDFMSIPQGPVKNQIIECGNRTMAPNTLPTESDPDPKPPERPIMKLFAYLRDLCLNYQLEALHYQASQLGRSAWATHTRLLISPDRGNLTIMYWLHARPVPTIVPRPGQQPSKNPPQPTPQGTLTIRRHVERHSPSRTRALDFLNGYPLKDKLSPDGQDGDFGASHTERLQVLWRPIELTNQAGSVTQETLKGLKIRQGDEVDFLKSEAGLIELELTMSELCLESIIQRAVRVHTDCTLRRAFSDLTRLERPAGGSSTHAVPYFSSVRLIPWEGSSNSERFAKSIEVGLHARHAVEVLIDQFSGRFRLQSVTHPYRPNEDDNDSVHRLGGGCFSGYNPFRLSQSANKINLNPGGLRDVLVRLKSDILLDQIEFKARLLGIRTTRNLPIQLQLLSMPSYLSSPTTIPQHIFQLTLYCRLSNFPHHYLLIMVTEHGIRCALIIVNQDRDAQPSNKGGSSMFWNVNSVSAVEVPTFVDDLDEDGGVLDQFTLSRTQFQYVYHYCLVQVTLSQLKAQLRRNGISYEQMLPLTTEIIKKQYQEHRNQRSKLIRKPPPPSIKLPEFHPAFEVNGLLSIPLQGIIKPTFFHSDHQLEQKDIFAGNNLAVAVFLQPDSHFGVQIEVRFKFNSDKLKADELEKIIKSKEKTLNSKIVSEYLMKQSKSKSSNLRNLGRPPQGNEDDDDDEDEEPLSRRTQTTRPKPVSPVAVNPVEQSSPKECPDLEEDPDDQLVDSDSWSIDPHSSQFVIRFQHFNQRIDQIYLLSIQKFFKLIHSSATSVP
Length1080
PositionTail
OrganismPuccinia triticina (isolate 1-1 / race 1 (BBBD)) (Brown leaf rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.08
Grand average of hydropathy-0.534
Instability index51.90
Isoelectric point8.78
Molecular weight123456.73
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07743
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     370.48|     114|     352|     443|     630|       1
---------------------------------------------------------------------------
  320-  438 (192.56/99.99)	NQIIECGNRTMAPNTLPTESDPDPKPPERPIMKLFAYLRDLCLNYQLE.ALHYQASQLGRSAWATHTRLLISP.DRGNLTIMYWLHARpvptIVPRPGQQPSKNPPQPTPQGtLTIRRHVE
  488-  603 (177.92/216.94)	NQAGSVTQETLKGLKIRQGDEVDFLKSEAGLIELELTMSELCLESIIQrAVRVHTDCTLRRAFSDLTRLERPAgGSSTHAVPYFSSVR....LIPWEGSSNSERFAKSIEVG.LHARHAVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.45|      16|     352|     615|     630|       2
---------------------------------------------------------------------------
  615-  630 (31.41/20.83)	LQSVTHPYRPNEDDND
  970-  985 (31.04/20.48)	LRNLGRPPQGNEDDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.92|      45|     241|     191|     243|       6
---------------------------------------------------------------------------
  191-  243 (65.68/49.91)	HS.ARMRnydlptALQVLtNGYPtLPGRL.IDQFDSKPKLSDSEVIKIMQDLNEL
  440-  486 (75.24/37.39)	HSpSRTR......ALDFL.NGYP.LKDKLsPDGQDGDFGASHTERLQVLWRPIEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.64|      11|     945|      91|     103|       7
---------------------------------------------------------------------------
   91-  103 (20.46/17.32)	WG..PHlvPLQFVIQ
 1037- 1049 (19.19/ 9.34)	WSidPH..SSQFVIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07743 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTTSLENKSNVTSSKQPNEHYYHQSKQQTTQNNNHHPQQPFINTSPASSSSSTSNHQLNKKTKPECSAQRHPQFD
2) SKSSNLRNLGRPPQGNEDDDDDEDEEPLSRRTQTTRPKPVSPVAVNPVEQSSPKECPDLEEDPDDQLVDSDSW
3) TIVPRPGQQPSKNPPQPTPQGTLTIRRHVE
1
965
409
75
1037
438










Molecular Recognition Features






MoRF SequenceStartStop




NANANA