<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07730

Description Mediator of RNA polymerase II transcription subunit 20
SequenceMPVTGLYFIPASQNSPTATGTVIERLRSAYNPTLCGRWALEHKLLRDTPSCLPPSDYAPLPPLQPRFMQFLSLSHRQPYGFIYISDRPNPDPWDSRSLGATHVGRVQPQPQPQQPKQQQQQQQQQQQQQQQQQQQQQQQQQQQENPPLHTPDPPSAAGKTMMILDYPSYISFHAITLRACEPLWCPRHTITVPNGNHFEIGDFRIRIGDVRQTAPQTRMRGTIVEIEYRGPAGAGDVAASAAAAAAAAAGADTHPMTDGGETWPPSITDGNIGLGGGPGDEDGILYPQLETLSPSPSSSSALVEDIPTDEDWEVGEVLIRELWSRFAVEGAREVIRVPHLGKEAREARRLGKLGDRAVNARIAGADLARQYMEVFRFNR
Length379
PositionHead
OrganismBlastomyces gilchristii (strain SLH14081) (Blastomyces dermatitidis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Ajellomycetaceae> Blastomyces.
Aromaticity0.07
Grand average of hydropathy-0.637
Instability index62.82
Isoelectric point5.87
Molecular weight41940.45
Publications
PubMed=26439490

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364152
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP07730
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.64|      15|      15|     113|     127|       1
---------------------------------------------------------------------------
  113-  127 (31.97/12.08)	QQPKQQQQQQQQQQQ
  129-  143 (31.68/11.92)	QQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.24|      22|      27|     261|     282|       2
---------------------------------------------------------------------------
  261-  282 (43.24/27.63)	ETWPPSITDGNIGLGGGPGDED
  290-  311 (38.00/23.36)	ETLSPSPSSSSALVEDIPTDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.69|      37|     142|     183|     221|       3
---------------------------------------------------------------------------
  183-  221 (62.70/50.06)	LWC......PRHTITVPNGNHfEIGDFRiRIGDVRQTAPQTRMRG
  322-  364 (56.99/36.10)	LWSrfavegAREVIRVPHLGK.EAREAR.RLGKLGDRAVNARIAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.37|      22|      27|      44|      68|       4
---------------------------------------------------------------------------
   44-   66 (39.71/20.89)	LLRDTP.SCLPPSDYaPLP.PLQPR
   73-   96 (35.66/10.78)	LSHRQPyGFIYISDR.PNPdPWDSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07730 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAAGADTHPMTDGGETWPPSITDGNIGLGGGPGD
2) HTITVPNGNHFEIGDFRIRIGDVRQTAPQTRMRGTIVEIE
3) PDPWDSRSLGATHVGRVQPQPQPQQPKQQQQQQQQQQQQQQQQQQQQQQQQQQQENPPLHTPDPPSAAGKTMM
243
188
90
280
227
162










Molecular Recognition Features






MoRF SequenceStartStop




1) PYGFIYIS
78
85