<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07725
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPMIMEDSIDVDDLFGDPTSLELGLEGAAPTIKGLPQRLDELRLSGCSQKIAWSKLGAIAYVSQDGQKVLLRYLHCRPDDGKWTLSEESPINQIVDIHGGHTVVHLLWNESGSELAIVDSCGRIAIVTIMMSLNTVNQPRQASIDPDDDLAQPVGLMWLNLNRPLFGFHKATRTNNNRWNYPAYRRRPLGPLHPVNKSALVMVTKSGYIKLIYQNPDLRWGEISTELKTVGYLDGLLTHAALAPAEGSGISIATHSACGKVCFYRVQVKWDPPEWDQTIKPGGGSIAFPTPAFQVLHTKTEVLSAVFHPPAHDMDNITGFSPPNGEIYNLTHLEIITAPQLLPSTQAATGPCILAVASISPQNQLGQPPPCGLSSVLVRWQLDTMAQALHPSFDDVVSKKTASNPKSKIIFRRLDDIYFERYVVSIDYTEASSVLAITHDDSSISFFEARSMRPITENEDGNTVTSMPNAGFIFPIDASGLHIAFSPSGCIAAVLDGEGQFHLRYMEHSFGMEDGMYDSGKFTCAIAALALGYVRACGSDASADDILAVIVRQLNPDAQRTFVTEVYSILFTSVDFTEHDKLVNNQSIQKGLSMQAVLGFRSRFQPRAPSSTVSWIILNIRQIMVLLLTVSHYLKNGKDSTPSEPEVLRMVLGNVKWILDLAKYLVDDLLEIADTIPADRTSFTLSSKTYESPSLILVLSSIPRSFLRHIFRYLGRFPLTFKAANNLSGESYQLFASINDTIDQSSLKPDVCEKMLAHIDSIVTRTYEAAGFGSAERNAPEREMLITCSIPPVLQPAVMSILTETVPLVVRPGVERMALALYDYSWLGIGDDKRTELFKRTHDVDILKKNVGKVLDATVAKRRCVRCCEVSEDTCLPRSASMYRLIGKIGVLRTCVCGGSFAMENVEALDRVSLPVYR |
Length | 918 |
Position | Tail |
Organism | Blastomyces gilchristii (strain SLH14081) (Blastomyces dermatitidis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Onygenales> Ajellomycetaceae> Blastomyces.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.039 |
Instability index | 43.11 |
Isoelectric point | 5.85 |
Molecular weight | 101274.02 |
Publications | PubMed=26439490
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP07725
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.04| 21| 23| 118| 139| 1
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118- 139 (33.12/23.16) VDSCGRIAIVTIMMSLNtVNQP
144- 164 (39.92/23.70) IDPDDDLAQPVGLMWLN.LNRP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 197.45| 62| 430| 202| 417| 2
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348- 417 (93.61/295.98) ATGPCILAVASISPqnqLGQPPPCGLSS....VLVRWQLDTMAQALhpsFDdvVSKKTASNPKSKIIFRRLDDI
779- 844 (103.84/22.21) APEREMLITCSIPP...VLQPAVMSILTetvpLVVRPGVERMALAL...YD..YSWLGIGDDKRTELFKRTHDV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.67| 33| 430| 50| 83| 3
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50- 83 (60.32/44.26) KIAWSKLGAIAYVsQDGQ.KVLLRYL.HCRP.DDGKW
482- 517 (52.34/33.37) HIAFSPSGCIAAV.LDGEgQFHLRYMeHSFGmEDGMY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 109.68| 36| 430| 202| 246| 4
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178- 218 (61.01/36.27) RWNYPAYRRRPLG.........PLHPVNksalvMVTKSGYIKLIYQNPDL
219- 268 (48.68/45.02) RWGEISTELKTVGyldgllthaALAPAEgsgisIATHSACGKVCFYRVQV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.60| 16| 16| 425| 440| 5
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425- 440 (27.47/20.01) SIDYTEASSVLAITHD
443- 458 (29.13/21.69) SISFFEARSMRPITEN
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