<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07694

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMLSAQDISVLANAPPSPDIWDSHCAPPLNSMASLSTHASSLSPCFKPACTAAPTPSCAQPQSDTYVSDNAPHKRFYYKRFPDKRKRSPGDIGDCERKSARPQSSTKLPNDDSSLDDTGDCDKKSAHPQFDTDLSDDNDSPHKRFYDKERLTQERIADKRERSLAHPDPLTQLTEDLYELCGLTDLAAEVAREKPNGEKNALRKTYKGHIKRLGVAGHFDVQKKKEDAPSEFMAILQVPELEWNVHQVKGREISDGLSMTTMSNLGRAMNMSKGPIPKAVWDSSVLGDLAPSNGNASKPISAKPSAPGTPLASTPNAMGRPQPQSLAGQDPNRPRRNVKKRSYGESSFEGYGEGYPDDDGGMDTGYSTGEGEGSGPKRRKQIHLRMAS
Length387
PositionHead
OrganismPochonia chlamydosporia 170
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Clavicipitaceae> Pochonia.
Aromaticity0.05
Grand average of hydropathy-0.932
Instability index59.17
Isoelectric point7.13
Molecular weight42250.53
Publications
PubMed=27416025

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP07694
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.91|      23|      23|      88|     110|       1
---------------------------------------------------------------------------
   88-  110 (43.77/21.50)	PGDIGD.CERKSARPQSSTKLPND
  114-  136 (43.69/21.45)	LDDTGD.CDKKSAHPQFDTDLSDD
  152-  175 (33.45/14.99)	QERIADkRERSLAHPDPLTQLTED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.61|      63|     259|      10|      76|       2
---------------------------------------------------------------------------
   10-   76 (113.77/50.88)	LANAPPSPDIWDSHCappLNSMASLSTHAS...SLSPCfKPACTAAPTPSC...AQPQSDTYVSDNAP....HKRFY
  270-  342 (100.84/37.38)	MSKGPIPKAVWDSSV...LGDLAPSNGNASkpiSAKPS.APGTPLASTPNAmgrPQPQSLAGQDPNRPrrnvKKRSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.93|      11|      18|     343|     353|       3
---------------------------------------------------------------------------
  343-  353 (22.02/12.11)	GESSFEGYGEG
  364-  374 (21.91/12.02)	GYSTGEGEGSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07694 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RSPGDIGDCERKSARPQSSTKLPNDDSSLDDTGDCDKKSAHPQFDTDLSDDNDSPHKRFYDKERLTQERIADKRERSLAHPDP
2) VWDSSVLGDLAPSNGNASKPISAKPSAPGTPLASTPNAMGRPQPQSLAGQDPNRPRRNVKKRSYGESSFEGYGEGYPDDDGGMDTGYSTGEGEGSGPKRRKQIHLRMAS
86
279
168
387










Molecular Recognition Features






MoRF SequenceStartStop




1) PQSDTYVSDNAPHKRFYYKRFPDKRKRS
2) SYGESSFEGYGEGYPDD
3) TGYSTGEGEGSGPKRRKQIHLRMAS
60
341
363
87
357
387