Description | Mediator of RNA polymerase II transcription subunit 10 |
Sequence | MAPYKALTPQRGVAPAVRASSHANPPSTPSGRDQDHRAGTPQGTGTASGSGAGTPTGRAGRAGNRFQNDATQRVVRHKKTPYVYRIGIRLPREKLRQFPRYNGKVGKFLSEGAGAGSFVTLKVPGLHTILNSRPRQFPSTSALESADTVATAVSAAAFAPSPGTIPSGAPSIFSEVEPLSDSRTPVTNASSPQETCLDYGLRDLWRGAEEELPAATSGSSIAHDQYRPVPEESKHSTTPGTLDQSYVFPDRTGPDFEDRPVAERLLRNPDTDDDAMAPVKDTSNVHNTIKDIIQHLTDIQIQTHGYIPDTQDLLVDKLTDLTNSLSQLKHLTSPTESPNNYIHQVAIAPEIVDYVDDGRNPDIFTRDFVENVQRGNAVINGKQQAFREFTEIFAEKLKEGIPGVSKEVDRVLRNAGFDEQHDSTANGDEQAASQAGDSNPNGPANG |
Length | 446 |
Position | Middle |
Organism | Fonsecaea erecta |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Fonsecaea. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.681 |
Instability index | 33.27 |
Isoelectric point | 5.68 |
Molecular weight | 48046.25 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364146 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07677 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 98.89| 32| 36| 281| 316| 1 --------------------------------------------------------------------------- 269- 307 (47.58/39.88) PDTDDDAMApvkDTSNVHNTIKdiiqHLTDIQIQTHGYI 308- 342 (51.31/32.96) PDTQDLLVDkltDLTNSLSQLK....HLTSPTESPNNYI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 56.70| 17| 23| 28| 46| 2 --------------------------------------------------------------------------- 28- 46 (29.40/20.98) TPSGRDQdhRAGTP.QGTGT 54- 71 (27.30/12.85) TPTGRAG..RAGNRfQNDAT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.91| 13| 18| 414| 427| 3 --------------------------------------------------------------------------- 414- 427 (20.16/11.28) NAGfDEQHDSTANG 434- 446 (25.76/10.55) QAG.DSNPNGPANG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.66| 12| 27| 364| 375| 4 --------------------------------------------------------------------------- 364- 375 (21.98/16.24) FTRDFVENVQRG 389- 400 (20.68/14.86) FTEIFAEKLKEG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 99.42| 33| 37| 118| 154| 5 --------------------------------------------------------------------------- 118- 154 (47.43/38.82) FVTlkVPGlhTILNSRPRQFPSTSAL.ESADTVATAVS 158- 191 (51.98/30.23) FAP..SPG..TIPSGAPSIFSEVEPLsDSRTPVTNASS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.63| 15| 18| 202| 216| 6 --------------------------------------------------------------------------- 202- 216 (26.77/14.27) RDLWRGAEEELPAAT 223- 237 (27.86/15.10) HDQYRPVPEESKHST --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DYGLRDLWR 2) HKKTPYVYRIGIRLP 3) MAPYKALTPQRGVAPAVR 4) VFPDR | 198 77 1 247 | 206 91 18 251 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab