Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MDSLVLRPLSSIETHLTALITSFTQTNTFANAPQLARDLLADDDELGSALSLLQRHQQNYAHILNLRAEVATLQEQLKDTIRKCVSFRQEIGQINPSILDSGSDDDEEEEDADNSHVAKVDYHTLLTFAARIGKHNTIAAREAEAESLRRKMATKNKEQTSPSAAALNGVAHPATDEGGAAEEFTEATDENRTAETTAELTRIDNSIALQRAQMGMSFPDAALLRVGALGQLQLFVERQRQQSGVDAGVGEDESKAVQEALEREVERLVRETEDIAEDTGTDAEMAEGEDTTTAAGGWPASPELKRSSTFEGEKSQDATASAAAQPLTTAAAATTTSQGATQALKPPNKPPQQPKRKLDLDFPDSDEEDED |
Length | 371 |
Position | Middle |
Organism | Fonsecaea erecta |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Fonsecaea. |
Aromaticity | 0.03 |
Grand average of hydropathy | -0.657 |
Instability index | 53.58 |
Isoelectric point | 4.49 |
Molecular weight | 40110.35 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP07671 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 101.50| 36| 74| 92| 132| 1 --------------------------------------------------------------------------- 92- 132 (53.27/40.69) GQINPS..IL........DSGSDDDEEEEDADNSHVAKVDYHtlLTfaaRI 158- 203 (48.23/24.98) EQTSPSaaALngvahpatDEGGAAEEFTEATDENRTAETTAE..LT...RI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 30.33| 9| 26| 210| 221| 2 --------------------------------------------------------------------------- 210- 221 (13.06/17.01) QRAQMGMsfpDA 239- 247 (17.27/ 9.87) QRQQSGV...DA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 85.28| 26| 26| 287| 312| 3 --------------------------------------------------------------------------- 287- 312 (45.14/22.27) EGEDTTTAAGGWPASPELKRSSTFEG 314- 339 (40.14/19.09) KSQDATASAAAQPLTTAAAATTTSQG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AAAQPLTTAAAATTTSQGATQALKP 2) LRRKMA 3) PQQPKRKLDLDFPDSDEEDED 4) STFEGEK | 322 148 351 308 | 346 153 371 314 |
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