<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07656
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDPSYNMDVDDLFGDSEHVTLQTMAATPPVKGLAKRIDELASSGCCQKIAWSKNGCVAHISPDGYNIHLNVFSRDTKTGKWDLGKDIQVDLPQGRDIFPFVHLSWSHLGNELVVMDEAGRATIFTCAMALDRLQFMRAELVHPESEVDGVVGMHWLGILPYEQKNQIAWSAARDGSKWKWNIKPHTFHDAHHPVDGKASLVYLKRHGELKLRFQQMDNSWHESSAQLGPMISTKEPFTHAAFASNNDNTLLLAAYDLKRRLHLYRVETTWNVPEKRTQNTVPFDKPSIQVSLITIEDNCYPIDLSSGDLSNGTEPRGAAAARLTHLNFLPMTPDQEDGSVPTIQAIFCRPPNIVSFDQLNPQESPNSVIVSWSITQTQQNQLHPSLDQVTSKKKGVSSVPSQTSLLMKRQPDFTLHAVVLAFFPIWYNMYLTLCYSDGTIEFRKRATMENIVPDDNTDTVTSLLQAGFAFSHADPSLHVAFSPNHCIAVCMQQDGPVKLRTMDYQHGTIATDDNDPRHSAALAALILQSSSAANQYYSSDDIFAIIGDISDKTKQDFTNLLFDGLQVNIDCIDEMSNHHLILLGRSPFFVKALSAMHLLGLEGTIKRSLTSKMAWIILNIKYVTQILTTIARMHGSLDKSSLRPEVVPQFIGICRWVMHFMAYALDELFTIGRSLQDIEPADLTRDVLEKKIHELNKPIVLLFLSAFPRAMMKLWTQPITWVKRSAETYTKTNPDPSNAAQTPSPEIRRLYTPLHTAVNEVPFDWRWFETLVSETHADVRNIYKKANFSDVQRNAIERELLLGKIPDVLFPVARKLVTDSLWNSAAPNGGLADKLDVGRLMFFDTTWLGFQESRRGGAWHDAHVVDVCQKMIIRGLGTQSHPVIASQGSRARSESIQSFGGGGGVGGAMNGGEEGRKKKAQLRQCTRCGAYMEDVVQGLPGYTAHHAGWLMGVAKHCVCGNSWMLAEEKKWR |
Length | 972 |
Position | Tail |
Organism | Pyrenochaeta sp. DS3sAY3a |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Cucurbitariaceae>
Pyrenochaeta> unclassified Pyrenochaeta.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.270 |
Instability index | 46.73 |
Isoelectric point | 6.49 |
Molecular weight | 108769.77 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP07656
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 96.29| 30| 117| 333| 369| 1
---------------------------------------------------------------------------
333- 369 (48.67/55.56) PDQEDGSVPT.IQAIFcrppnivSFDQLNPQ....ESPNSVI
453- 487 (47.62/34.46) PDDNTDTVTSlLQAGF.......AFSHADPSlhvaFSPNHCI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.13| 33| 117| 572| 608| 2
---------------------------------------------------------------------------
572- 608 (45.80/42.18) IDEMsNHHLILLGRSPfFVKALsaMHLLGLEGT.IKRS
692- 725 (56.34/34.64) IHEL.NKPIVLLFLSA.FPRAM..MKLWTQPITwVKRS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 176.74| 55| 117| 47| 109| 3
---------------------------------------------------------------------------
47- 109 (93.23/64.06) QKIAWS..KNGCVAH..ISPDGY.NIHLNVfsrDTKTGKWDLGKDIQVDLPqgrdiFPFVHLSW....SHLG
165- 228 (83.51/42.73) NQIAWSaaRDGSKWKwnIKPHTFhDAHHPV...DGKASLVYLKRHGELKLR.....FQQMDNSWhessAQLG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.42| 27| 120| 537| 566| 4
---------------------------------------------------------------------------
537- 566 (41.90/33.21) YSSDDIFAIIGDISDKTKQDFTNllfDGLQ
663- 689 (45.52/27.88) YALDELFTIGRSLQDIEPADLTR...DVLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 129.44| 40| 392| 372| 412| 9
---------------------------------------------------------------------------
372- 412 (64.80/51.07) WSITQTQQNQLHPSLDQVTsKKKGVSSVPS...QTSLLMKRQPD
765- 807 (64.64/45.93) WRWFETLVSETHADVRNIY.KKANFSDVQRnaiERELLLGKIPD
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