<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07641

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMPGAESLTNVTLRPWPTSKKEELGSQDLLQQVEQLANERGHLRNVTEKSLREDIAAGIDASVETTSDSEGKKDKKDAPSKEERLQDVFRMQQEMSSHMEWAKFAANNAVDLISLVLSADPNKRSVASFSHTFRTEGLSQGIPFGSFGVSKENHDQHVRKPDELQSLQEYEQRQELVSKGSRMAALDTATDDILKAAKQFEKEVRRETKYWQEIVSISDKGWPIQRVRQNARNVPFAVRYGLPEASDHFKARGLAPLRKDKDGSIILDPALALKPKTLRVRISHNGKITGMSHLPVDGAENDSSIEKTIQLARDSLFEEELFHEMRLETRQLLPYGVEYRDSVIHVKAADAKESNREKKLLIDCIARDDHSFNYQDHSGDWLAQDVAEGLRLLLAHEHSMRLYRRSQLPPPLTGQEREAPSPPLLRTLLAVFHHIEGVDALYEHLGQVTKTLSSAGLSVHLETTRESSWASFAKSLQSSQKKRMSATDQLLEMFAKPFEGKAILAISPSSGAQQDNLTIATRTVIGQPTFGTEHKLILPSALVADLGLFQQLKFTSVEETTSYLDWILSLHVAHRCLKGDFPRALIKENDARLIIRSKDAKKEATVDQDISVELQNGELKLTTKTVSGASEDAVQSYVWKGQEGEVALVDKVKSWVG
Length656
PositionHead
OrganismStagonospora sp. SRC1lsM3a
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Massarineae> Massarinaceae> Stagonospora> unclassified Stagonospora.
Aromaticity0.06
Grand average of hydropathy-0.541
Instability index43.76
Isoelectric point6.20
Molecular weight73458.04
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364140

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07641
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.20|      12|      72|     322|     333|       1
---------------------------------------------------------------------------
  322-  333 (23.16/17.86)	HEMRLETRQLLP
  397-  408 (24.04/18.84)	HSMRLYRRSQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.38|      21|      70|      79|     100|       2
---------------------------------------------------------------------------
   79-  100 (35.09/24.92)	SKEERLQDVfRMQQEMSSHMEW
  149-  169 (38.30/22.26)	SKENHDQHV.RKPDELQSLQEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.63|      35|     392|      16|      68|       4
---------------------------------------------------------------------------
   30-   68 (48.09/36.04)	QQVEQLANERGHLRNVTeKSLRediAAGIDASVETTSDS
  432-  466 (59.54/49.98)	HHIEGVDALYEHLGQVT.KTLS...SAGLSVHLETTRES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.63|      21|      36|     301|     321|       6
---------------------------------------------------------------------------
  301-  321 (33.68/25.93)	DSSIEKTIQLARDSLFEEELF
  340-  360 (32.95/25.19)	DSVIHVKAADAKESNREKKLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07641 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DIAAGIDASVETTSDSEGKKDKKDAPSKEERLQDVFRMQ
2) MPGAESLTNVTLRPWPTSKKEELGSQDLLQQVEQLANERGHLRNVTEKSL
53
1
91
50










Molecular Recognition Features






MoRF SequenceStartStop




NANANA